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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatgattttttttcttttctataatgatttttgttgctttacatgtatcattcgcatttgttggatgttttgttgctgggatggtatgataacg...

Basic information

species Zea mays
transcript GRMZM2G138676_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g62500.1 (Oryza sativa), 5'ss of exon 6
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatgattttttttcttttctataat-gatttttgttgctttacatgtatc--attcgcatttgttggatgttttgttgctgggatggtatgataacg
||||||||||| |||||||| |||||||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||| | |     ||| ||||||||  |  || | | ||||| ||||  |     | |   | ||  |||   |  ||  |     |    || |  |  
ATATGCCGAGCACTTGCTTACATACATAACTGTGTTGGCATCTGCCACCGTGATATAAAACCACAGAATGTTCTTgtgagattttaacccctttattttctatgcttaatatgttttgctgtacagatcctcaaatataaattaatggggatcatg--gaaaataaaacataactaa-

upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G00400.1 (Glycine max), 5'ss of exon 5
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatat----gattttttttcttttctataatg----atttttgttgctttacatgtatcatt-cgcatttgttggatgttttgttgctgggatggtatgataacg
|| ||| | || |||||||||||||||||||||||||| || || || ||||| |||||||| |||||  | ||||| ||||||    || || ||   || | | | |||    | || | |||   |  |||| |||    ||| |||        |   ||  |  |||  |||  |    
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttattgatttgtttgttatgtggaacttattttgtagtcaatgtctcacaatgcacttgc-----actcatttattatgatattatttt----

upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G28730.2 (Glycine max), 5'ss of exon 6
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatgattttttttcttttctataatgatttttgttgctttacatgtatcattcgcatttgttggatgttttgttgctgggatggtatgataacg---
|| ||| | || |||||||||||||||||||||||||| || || || ||||| |||||||| |||||  | ||||| ||||||   |   ||  |  | | |  || | | ||   |||     ||||  |     | |  |       |  ||  |  |||  |||  | |     
ATTTGCAGGGCCCTTGCTTATATACATAACTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTACTTgtaagatatttctgagttaatgatttgtt-tgctatgtggaacttatttggtatagtcaatgtctcataatgcactcatt--tatgatattatttttatttag

upper sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 5
ATATGCCGAGCGCTTGCTTATATACATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatgattttttttcttttctataatgatttttgttgctttacatgtatcattcgcatttgttgg-atgttttgttgctgggatggtatgataacg-
|| ||| |||||||||| ||||||||||| |||||||| || || |||||||| ||||| || |||||  | ||||| ||||      || || |   |  |  ||  || ||  |    ||| | |    |     | | | |  |||  ||  || ||      | |  |  |  
ATCTGCAGAGCGCTTGCGTATATACATAATTGCATTGGTATTTGTCACCGTGACATCAAGCCTCAGAACTTACTTgtaagattctcccttcttacgagttgaggat--ttgttacttacataccttttcagtgtaactctatggtcatgaattcatgttgtatccatttttttgcca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931035|gb|CF035847.1|CF035847
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
EST: gi|211037863|gb|FK972663.1|FK972663
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
EST: gi|6095487|gb|AW120154.1|AW120154
EST:     ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTT                         GTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA
genomic: ATAACTGCATTGGCATCTGCCACCGTGATATCAAACCGCAGAATGTTCTTgtgagatatg ... tctactgtagGTTAACCCACATACACACCAACTCAAAATTTGCGATTTCGGAAGTGCTAAA