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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGGAATATTGAATGTCAAGGTGATTGGAGGCACCAACCTAGCCATCAGGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttggtcgttttgttagaatcacaacaaaataaacatatactttgttatcaaattacagcgccctcttgttgattgcag

Basic information

species Zea mays
transcript GRMZM2G138349_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G138349_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g10480.1 (Oryza sativa), 5'ss of exon 7
CATTGGAATATTGAATGTCAAGGTGATTGGAGGCACCAACCTAGCCATCAGGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttg---------gtcgttttgttagaatc---acaacaaaataaacatatactttgttat--caaattacagcgccctcttgttgattgcag----------------------------------------------
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CATCGGAATATTGAATGTCAAGGTGAAAGGAGGCACCAACCTAGCCATCAGAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtc-tctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211245510|gb|FK953342.1|FK953342
EST:     GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAG                         AAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA
genomic: GGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttgg ... ttgattgcagAAAGCACAAACTTCAGTAATCAATGGCAACCTGAATCCTGTCTGGAATGAA