Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatatttaatgcag

Basic information

species Zea mays
transcript GRMZM2G137528_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatatttaatgcag
 |||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| |||||   | |   ||| ||    | |   |||      | | |     | || |  |    || ||||    |||||| ||  ||||||
GATGGAGTCTGGAACTGGCAACGGTGACAGTGAAGTCCAGCGAACCATGCTTGAGCTTCTGAACCAACTTGATGGTTTTGAAGCATCAAACAAAATAAAGgtgtgccactgctt-tgcatatgttatatgtgccgattaataaccgtgaaggagt--ttattgtgacacgttaaatgttccatgcag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatattta-atgcag----------------------------------------------------------
 ||||| ||||||| |||||||||||||||||| || |||||||| ||||| |||||||| |||||| | ||||| |||||||||||||| || || |||||| |  | |  |  |||     ||   | |    | || || |||     || | |    |    |||| |||| |   | ||| |                                                           
GATGGAATCTGGAAGTGGCAACGGTGATAGTGAGGTACAGCGTACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGgtaaaggagctatactgtaatagtgtattaa---ggggaattttaaagctagtctgatgtccac--tgttctaaaaagaaatatgtaacagttgaacttaacagatattatttaccctctcatttgagaaaaattttcaattgtag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatatttaatgcag----------------------------------------------------------------------------------------------
 ||||| ||||||| |||||| ||||||||||| || |||||||| ||||| |||||||| || ||| | ||||| ||||||||||||||||| || |||||| |  | |  |  ||||  | ||   | |        ||     ||    |||  | |  ||  ||     || || |    |||                                                                                              
GATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAGCGTACTATGCTGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAACAAGATCAAGgtaaaggagctatactgtta-tgtgtattaaggggaattttaaagctagtcttatgtccactgttctgaaaagaa-atctgtaacagttgaacttaacagatattatttactctgtctgactcatttgagatgagttctcaattctttgtggaggttctgaagataaattttcaattgtag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgt------------------tcctttgcgatgaattagtgat-ttgtaat---aaatgtataacaa--tcgtgatgttttaaatatttaatgcag
 ||||| ||||||| ||| || ||||| ||||| ||||| || |||||||| || ||||| || || ||||| ||||||||||| ||||||||||| |||||||  | | | ||||                    |    |  ||||| |  ||| | ||||| |   ||||   | |||   || |  | | || |||   |  |||||
TATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCATGCTCGAGCTTCTCAATCAACTTGACGGTTTTGAAGCGTCAAACAAAATCAAGgtacctattaagttgtaaaggaaaaaaaaccataagttgaataggatgagtctgtgttattgtagtctgaaattgctgacagagtcatattctctttaatgactgttgcag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacac---aatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatatttaatgcag
|||||| ||||||||||| || |||||||||||||||||||| || ||| | || ||||| || || || ||||| |||||||| |||||||| || ||||||| |   ||| | || | ||| || |   | | |||   ||||    |   |  ||||| || || |||   | |  ||||| | |||
AATGGAATCTGGAACTGGAAATGGTGATAGTGAAGTGCAGCGAACTATGTTGGAGCTTCTCAATCAACTGGATGGATTTGAAGCCTCAAACAAGATCAAGgtactcctcaataatttctcttcgttggtagtaagtta--aattttgtctctgtaaataactattgt-atgagatgaccatttattacag

upper sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 6
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtac-acaatcacttgtgttcctttgcgat---gaattagtgatttgtaataaat-gtataacaatcgtgatgttttaaatatttaatgcag------------------------------------------------------------------------------------------
 ||||| || |||| |||||| |||||||||||||| ||||| || ||||| || ||||| || || || ||||| |||||||| || ||||| || || |||| |  |  | |||    |||||  | |   |   ||||  | |||    | | |||| | | | |||   || ||  ||||   ||                                                                                             
TATGGAATCAGGAAGTGGCAATGGTGATAGTGAAGTCCAGCGGACTATGCTGGAGCTTCTCAATCAACTGGATGGATTTGAAGCATCCAACAAGATAAAAgtactattaataattgctaccctttttgcttctgctgtagttgtgtgtgcccacttgtattatatttgtgtatttatatgtattatgtgtgtggtatttgttatctagtagaatcagcaaaatggttggaaattggtggaatctgtatgtcatatctgtgacaacatgatcaatattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211436662|gb|FL284171.1|FL284171
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|37393602|gb|CF634067.1|CF634067
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|5108208|gb|AI739921.1|AI739921
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|6989624|gb|AW447837.1|AW447837
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434073|gb|FL284166.1|FL284166
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTNAAGCTTCAAACAAAATTAAG                         GTTTTGATGGC
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGC
EST: gi|211434072|gb|FL284165.1|FL284165
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|60341929|gb|DN208902.1|DN208902
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|213167947|gb|FM194936.1|FM194936
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436664|gb|FL284173.1|FL284173
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436658|gb|FL284167.1|FL284167
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|86468970|gb|DY235340.1|DY235340
EST:     GAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: GAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434071|gb|FL284164.1|FL284164
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436667|gb|FL284176.1|FL284176
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436671|gb|FL284180.1|FL284180
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436666|gb|FL284175.1|FL284175
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|6654125|gb|AW267530.1|AW267530
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|20300608|gb|BQ163551.1|BQ163551
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|32944271|gb|CF049090.1|CF049090
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211070411|gb|FL012986.1|FL012986
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|67024358|gb|CO453107.1|CO453107
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGNAG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTG-AG
EST: gi|211434065|gb|FL284158.1|FL284158
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436670|gb|FL284179.1|FL284179
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTNCAAACAAAATTAAG                         GGGTTTTGATGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagG--TTTTGATGG
EST: gi|211436659|gb|FL284168.1|FL284168
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436668|gb|FL284177.1|FL284177
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|32941552|gb|CF046371.1|CF046371
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436663|gb|FL284172.1|FL284172
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434068|gb|FL284161.1|FL284161
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|86471403|gb|DY237773.1|DY237773
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|32945809|gb|CF050628.1|CF050628
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|4776454|gb|AI665457.1|AI665457
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|60395128|gb|DN227997.1|DN227997
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|37383142|gb|CF628557.1|CF628557
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|60352642|gb|DN219615.1|DN219615
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211431472|gb|FL284151.1|FL284151
EST:     CCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: CCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|60350071|gb|DN217044.1|DN217044
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436665|gb|FL284174.1|FL284174
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434062|gb|FL284155.1|FL284155
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|21391089|gb|BQ529138.1|BQ529138
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCCTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436669|gb|FL284178.1|FL284178
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211431471|gb|FL284150.1|FL284150
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|6865378|gb|AW360728.1|AW360728
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|60353200|gb|DN220173.1|DN220173
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211431470|gb|FL284149.1|FL284149
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|32839440|gb|CD979121.1|CD979121
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436660|gb|FL284169.1|FL284169
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|148954179|gb|EC899582.2|EC899582
EST:     TTGAACTTCTAAACCAGCTGGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAACCAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|149004243|gb|EE039011.2|EE039011
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434059|gb|FL284152.1|FL284152
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|61118809|gb|DN559770.1|DN559770
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211436661|gb|FL284170.1|FL284170
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|32866276|gb|CF005958.1|CF005958
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434066|gb|FL284159.1|FL284159
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|149001189|gb|EE038457.2|EE038457
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|148981184|gb|EE027483.2|EE027483
EST:     CAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: CAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|113702815|gb|EE680319.1|EE680319
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATCTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434064|gb|FL284157.1|FL284157
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|211434070|gb|FL284163.1|FL284163
EST:     TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
EST: gi|149050302|gb|EE048574.2|EE048574
EST:     TGAACTTTTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAG                         GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG
genomic: TGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 396

AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 213

AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 241

AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 319

AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatc ... tttaatgcagGTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGAGTCTGGAACTGGCAACGGTGATAGTGAAGTGCAGCGTACCATGCTTGAACTTCTAAACCAGCTTGATGGTTTTGAAGCTTCAAACAAAATTAAGgtacacaatcacttgtgttcctttgcgatgaattagtgatttgtaataaatgtataacaatcgtgatgttttaaatatttaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC