1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAAGAATCAAATGAAAGTGTGAAACCTCAAAGGGTGGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcattgttagataactttgcactggttttagtttaagaacatttgggcaccattcctttccttacaccgttctgcaatgatatag
species | Zea mays |
transcript | GRMZM2G137479_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAG TTCTACTCAAAGCTTGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGCEST: gi|211099832|gb|FL388145.1|FL388145
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
EST: AAAAAGAAGAGAG TTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGCEST: gi|26456844|gb|CA828427.1|CA828427
genomic: AAAAAGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
EST: CGTATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAG TTCTACTCAAAGCTTGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGCEST: gi|22818997|gb|BU499087.1|BU499087
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
EST: CGTATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAG TTCTACTCAAAGCTTGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGCEST: gi|20506971|gb|BQ279426.1|BQ279426
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
EST: CGTATGGATTTAG-TTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAG TTCTACTCAAAGCTTGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
genomic: CATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcatt ... aatgatatagTTCTACTCAAAGCTCGAGGAGAAGATTCATGCACAGGAACTGGAGAAAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAGAATCAAATGAAAGTGTGAAACCTCAAAGGGTGGGCAGCACTCCTTCATATGGATTTAGTTTTAAGTGTGATGAGAGAGCTGAAAAAAGAAGAGAGgtaactcattgttagataactttgcactggttttagtttaagaacatttgggcaccattcctttccttacaccgttctgcaatgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA