1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTGACAGGGCCTCAGAGCTCAATATTAGCTGGGATCCTGCTGAACAAAGTTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataataatgaatatgataattttatattgcatttcctttatccagcttactatcacaggtgaagaattacattttatttgtttatagttgctgatttcatatgtctatttcttgtgcag
species | Zea mays |
transcript | GRMZM2G136293_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAG CATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTGEST: gi|37385535|gb|CF629914.1|CF629914
genomic: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataa ... tcttgtgcagCATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTG
EST: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAG CATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTGEST: gi|5791256|gb|AI978048.1|AI978048
genomic: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataa ... tcttgtgcagCATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTG
EST: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAG CATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTGEST: gi|113702216|gb|EE679720.1|EE679720
genomic: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataa ... tcttgtgcagCATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTG
EST: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAG CATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTG
genomic: TTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataa ... tcttgtgcagCATCGATTAGTCTGGGGAAACGAACTCATGAGTTGCATGGCTCGAGTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGACAGGGCCTCAGAGCTCAATATTAGCTGGGATCCTGCTGAACAAAGTTCACAGTCAACAAAACATAGTCAGGAGGATGAACACAGGAACCAACCAGgtatgcataataatgaatatgataattttatattgcatttcctttatccagcttactatcacaggtgaagaattacattttatttgtttatagttgctgatttcatatgtctatttcttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG