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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACAAGAGGAGTAGAAGAAGAATCCATCTTGCAAGCTTTGCCTGCTGATATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGTgtaagttgtggttatataacctagcccccatctcgcagatgataagtagagcttttagttttcggaagcttcttgatggtaataaacaagttgacgctctgttgcaccattgctttttgattccattctgcatttctgcaatgcag

Basic information

species Zea mays
transcript GRMZM2G135651_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135651_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g38580.5 (Oryza sativa), 5'ss of exon 6
TGCTACAAGAGGAGTAGAAGAAGAATCCATCTTGCAAGCTTTGCCTGCTGATATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGTgtaagttgtggttatataacctagcccccatctcgcagatgataagtagagc-ttttagttttcggaagcttcttgatggtaataaacaagttgacgctctgttgcaccattg-----ctttttgattccatt--ctgcatttctgcaatgcag-----------------------------------
||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||| || | ||     || ||        || ||||||   |||||||||  | ||| || | |||| |||         || |  ||||| |      ||      |   |||    | |  |  || | || |     ||                                   
TGCAACACGAGGAGTAGAAGAGGAATCCATCTTACAAGCTTTGCCTGCTGATATACGCCGGGATGTACAGCGCCATCTTTGTTTGGACCTTGTTCGACGTgtaagttgtggttattta-cttacatttcaactga------attagtagaatgttttagtttctgaaaggttttagatgttaaattttctagtggcattctgtcgtttggatggaaaaatcagtgacaaaagtaccaccagtgctacttcatagtctagcatgttttcttatcccttcctaaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034152|gb|FL368632.1|FL368632
EST:     ACATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGT                         GTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAG
genomic: ATATTCGTCGGGATGTGCAGCGTCATCTTTGTTTGGACCTCGTTAGACGTgtaagttgtg ... tgcaatgcagGTACCTTTTTTCTCTGAGATGGATAACCAACTTCTCGATGCCATCTGTGAG