1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctgaaatatattatgcactgtatgaaaaataagaactagtggactattgctaatggttaacagtgagtgttcatcgtgctgctaatttcaagc...
species | Zea mays |
transcript | GRMZM2G134889_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTAGGAAGACEST: gi|149077066|gb|EE165722.2|EE165722
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTT-GGAAGAC
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|71767590|gb|DR965527.1|DR965527
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: GATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|110965155|gb|EE185055.1|EE185055
genomic: GATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: GAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|31909789|gb|CD651094.1|CD651094
genomic: GAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAGAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|148938717|gb|EC883049.2|EC883049
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: AAGCTATAAAAG GACTTCGCTGAAGGTTTCTTGGAAAGACAAAGCTTACACCATTCTCCAAAEST: gi|67020721|gb|CO449470.1|CO449470
genomic: AAGCTAT-AAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGG-AAGAC-AAGCTTACACCATTCTACAAA
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|32801735|gb|CD953971.1|CD953971
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCGCTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|148974380|gb|EE025157.2|EE025157
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: GTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCGEST: gi|78105578|gb|DV523996.1|DV523996
genomic: GTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
EST: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAG GACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
genomic: ATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctg ... ctcttgacagGACTTCGCTGAAGGTTTCTTGGAAGACAAGCTTACACCATTCTACAAATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGCTTACACTGGTAATGAAGATGCTAGGAAATTTTTTCTTGATGGTGAGGTGTCACTTGAAGCTATAAAGgtaattgctgaaatatattatgcactgtatgaaaaataagaactagtggactattgctaatggttaacagtgagtgttcatcgtgctgctaatttcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa