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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatcttattgaatttgtattttgacttatttatattaatgtggttggcacgtgatgaattctttgcctatccctctgaacttctgatgcag

Basic information

species Zea mays
transcript GRMZM2G134770_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32841271|gb|CD980952.1|CD980952
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|166684106|gb|EG131653.1|EG131653
EST:     ATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: ATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32839908|gb|CD979589.1|CD979589
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|6021134|gb|AW066062.1|AW066062
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGNGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32841323|gb|CD981004.1|CD981004
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32835369|gb|CD975047.1|CD975047
EST:     ACCGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: A-CGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|32840727|gb|CD980408.1|CD980408
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
EST: gi|211157317|gb|FK993529.1|FK993529
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAG                         GAGCTGGCCGAGATAATGATTGGGAGAGTCCACAAT-GCCACAACATCA
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCA-AATTGCCACAACATCA
EST: gi|32841497|gb|CD981178.1|CD981178
EST:     CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGCCTGCAG                         GAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT
genomic: CACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatctta ... tctgatgcagGAGCTGGCCGTGATAATGATTGGGAGTGTCCAAATTGCCACAACATCAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCACGAGAGCTGGCTCATATTCTGATGAAGATTCTCAGAAGAAGTCTGCAGgtatatcttattgaatttgtattttgacttatttatattaatgtggttggcacgtgatgaattctttgcctatccctctgaacttctgatgcag

- - - AGAGCT
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG