1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagcttttgccttcaccactacaagccttcattcaagtggttctatgttacctgaaaactctagtatgtttcttgacatactagcatacagatatatg...
species | Zea mays |
transcript | GRMZM2G133959_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTEST: gi|76015724|gb|DT942894.1|DT942894
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTEST: gi|71431549|gb|DR812599.1|DR812599
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTEST: gi|71431548|gb|DR812598.1|DR812598
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTTEST: gi|166689586|gb|EG105222.1|EG105222
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAGAGACTT
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAAEST: gi|89764029|gb|DY690985.1|DY690985
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTCAATTGGTGCATACATAGGCTTGGAAGTCTTCAA
EST: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTG GTTGGTCATTC
genomic: TTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagctttt ... ttaaatgaagGTTGGTCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGATTTCATTGAGCAAGAGCTTCAGCATTCTGAACAACCAATAGTTTTGgtaagcttttgccttcaccactacaagccttcattcaagtggttctatgttacctgaaaactctagtatgtttcttgacatactagcatacagatatatg
- - - - - - AGCAAG
- - - - - - - GCAAGA
- - - - - - - - AGAGCT
- - - - - - - - - GAGCTT