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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCCTGGCAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgacaattccagttgtaagtttggtgcccttgacatgcttccaagcatccttgatcatagattcttgaaatgtacttcacattgtttttcctcaa...

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133749_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv00s0181g00120.t01 (Vitis vinifera), 5'ss of exon 7
TTTGCTGGATACAACAAAGCTATAAGAGTGTTTGATGTTCATCGGCCTGGCAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGT---GAAGGACCAACTGgtatgtgac---aattccagttgt--aagtttggtgcccttgacatgcttccaagcatccttgatcatagattcttgaaatgtacttcacattgtttttcctcaa
   |||||||||||||||  | ||||||| |||||||| ||||| ||||| ||||| ||||| |||||||||  | | || ||   |   ||||| | | | ||||  |      | ||    ||    || ||| ||   | |||     | | |   ||  |  | | | | ||   | |    | |  ||||||  |||   |  
---GCTGGATACAACAAATGTCTAAGAGTATTTGATGTACATCGCCCTGGTAGAGATTTTGAACAGTATTCTACAATTAAAGGAAATAAAGAAGGGCAATCAGgtacctattcttagtttttcttcctaaaatttagt-tacctgatg-aatgcaacaaattgtaaagcgttggttaa-ggatcacaataaacattgcattttagc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110507|gb|DV528917.1|DV528917
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|71437477|gb|DR818527.1|DR818527
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|71449230|gb|DR830280.1|DR830280
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|37418378|gb|CF646857.1|CF646857
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
EST: gi|78084101|gb|DV512494.1|DV512494
EST:     CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTG                         GTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG
genomic: CAGAGACTTTGATCAGTATTCTTTACTCAAGGGGGGTGAAGGACCAACTGgtatgtgaca ... ttcatgtcagGTATAATATCTTCAATTTCCTTCTCTCCACAAAATGGGATGCTTGCTGTTG