1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatcccccttcccctcacgggaagcttctgtacattatgctatgcttgcaagttgcattccatcctgtcttcttcttgctcagtacccccctgtttat...
species | Zea mays |
transcript | GRMZM2G133331_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAGEST: gi|76931345|gb|DV172707.1|DV172707
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAGEST: gi|71429731|gb|DR810781.1|DR810781
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAGEST: gi|93017001|gb|EB642521.1|EB642521
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAGEST: gi|71311268|gb|DR791947.1|DR791947
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAGEST: gi|101391801|gb|EB817829.1|EB817829
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
EST: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAG GCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
genomic: GGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatccccc ... cgctctgtagGCGTACATTGTGGAGCTGGAAAACAGCCGGTCCAAGCTGTCCCATCTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCAGAGGAGGCTTGCGCAAAACCGCGAGGCGGCCCGGAAAAGCCGGATGAGGAAGAAGgtgatcccccttcccctcacgggaagcttctgtacattatgctatgcttgcaagttgcattccatcctgtcttcttcttgctcagtacccccctgtttat
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG