Sequence
atgc intronic sequence ATGC exonic sequenceAGAGTCGACGGGCTACTGTTGATGTCTTCTTGAAGGCAGCTGGATACCTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtactctttagcaacttcctagcaggcaggcttcaattcaaacttgaagatatttactgaaacactcccgtctaacatgtgaatagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131969_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g44530.2 (Oryza sativa), 5'ss of exon 6
AGAGTCGACGGGCTACTGTTGATGTCTTCTTGAAGGCAGCTGGATACCTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtactctttagcaacttcctagcaggcaggcttca--attcaaacttgaagatatt-tactgaaacactcccgtctaacatgtgaatagcag
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AGAGCAGACGAGCTACTGTTGATGTTTTCTTGAAGGCATCTGGCTACCTAGACTGCGCAATTAGACAAGTACTACCCCAAATATCGTCGGAGTTAAGgttatgaacttttgagaagctg---agtagatgattttgaggatttaagctgaaagaaggtgtattgaca---tccatttcaatgtatgcattacag
upper sequence: GRMZM2G131969_T04 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G35900.1 (Glycine max), 5'ss of exon 7
AGAGTCGACGGGCTACTGTTGATGTCTTCTTGAAGGCAGCTGGATACCTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtactc-tttag--caacttcctagcaggcaggc--ttcaattcaaacttgaagatatttactgaaacactcccgtctaacatgtgaatagcag------------
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AAAGCAGACGGGCTTCTGTTGATATCTTCTTAAAGGCAGCTGGGTATCTTGACTGTGCTGTAAGGCATGTTCTTCCACAGTTGCCTGGCGAACTCAGgtt-tgtacccatttaatacaatcagttgattgtcacacaattttgtgtaatctaaacaat-cttccttatttttttgtattactcctctcactgttggttctgattttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71332018|gb|DR802906.1|DR802906EST: CTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAG GAGACAACTTCCAGTAGACCTGGCTGAAGGAAATCTCAAAGCTCTAAGCCT
genomic: CTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtact ... tgaatagcagGAGACAACTTCCAGTAGACCTGGCTGAAGGAAATCTCAAAGCTCTAAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGTCGACGGGCTACTGTTGATGTCTTCTTGAAGGCAGCTGGATACCTAGACTGTGCAGTTCGGCATGTACTCCCGAAGATGCCACTGGAGCTAAGgttctgtactctttagcaacttcctagcaggcaggcttcaattcaaacttgaagatatttactgaaacactcccgtctaacatgtgaatagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT