1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGACACCAATGTTGGTCGTATATGTGTAAGACTGGGATGGGTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttctgcactgtccataccatgtcggccatctatggattttcgccattttggtttaatctgattccaccacttcctttttttgctttgtcacag
species | Zea mays |
transcript | GRMZM2G131756_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCT ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAEST: gi|87156096|gb|DY400885.1|DY400885
genomic: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttc ... tttgtcacagATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAA
EST: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCT ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAEST: gi|94473171|gb|EB702129.1|EB702129
genomic: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttc ... tttgtcacagATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAA
EST: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCT ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAAEST: gi|26559363|gb|CA831598.1|CA831598
genomic: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttc ... tttgtcacagATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCTTTGTAA
EST: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCT ATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCT
genomic: GTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttc ... tttgtcacagATATCCTATCTTGGAAACTATACAAAAGTATCTTTGGCCTCGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACACCAATGTTGGTCGTATATGTGTAAGACTGGGATGGGTGCCCATTCAACCTCTTCCTGAATCTCTACAGCTACATCTCTTGGAGCTgtaagtgttctgcactgtccataccatgtcggccatctatggattttcgccattttggtttaatctgattccaccacttcctttttttgctttgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT