Sequence
atgc intronic sequence ATGC exonic sequenceCACAATGCAACAAAGAATAGGGGCAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAGgtatagctttgcttttcatgctaatggctatggcatctagctctaattaataattataggttcatgcttaattaaaacgaaatgcactttcaatttccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G131070_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 5'ss of exon 6
CACAATGCAACAAAGAATAGGGGCAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAGgtatagcttt------gcttttcatgc-taatggctatggcatctagctctaat---taataattataggttcatgcttaa-----ttaaaacgaaatgcactttcaatttccat----------------------------------------------------
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CAGCATGGACAGAAGACAGGTGACAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGTGGCTGTCAAAGAATATCTTGCGACAAAGgttacgttttctacctgacattcatttgtgatgcctatgg-attatgcttaaacacatgatatgctttgttttatatgtcacgagtttaaaataaattgatttgtgtttttttgttcatactttattgatgtacgttgttcttgtgcttctctgctattctgtgcag
upper sequence: GRMZM2G131070_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT4G32160.1 (Arabidopsis thaliana), 5'ss of exon 6
CACAATGCAACAAAGAATAGGGGCAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAGgtatagctttgc----ttttcatgctaatggctatggcatctagctctaattaataattataggttcatgcttaatt-aaaacgaaatgcactttc--aatttccat------------
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AGCCACAAATGAGAGACTTGTCAATGCAAAAACAGATATGGAGGATCTTATAGCACGGCTAAATCAAGAGATTGCTGTGAAAGATTACCTGAACAAAAAGgtacaataaaaaaaagtagtcatg--aattctgtttttttttttctctcatttttgatatcttatccttttttcctttggagcgaatggtagtgttgtaatgttggttttactgctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|74240813|gb|DT648727.1|DT648727EST: TAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAG GTTAAGGATTTGGAGGTTGAATTGGAAGCCGCAAAGCAAAAGGGTAGAGAG
genomic: TAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAGgtatagcttt ... tgtaatgtagGTTAAGGATTTGGAGGTTGAATTGGAAGCCGCAAAGCAAAAGGGTAGAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAATGCAACAAAGAATAGGGGCAGCAAAAACTGATATGGAGGATCTCATAGCACGACTAAATCAGGAAGCAGCTGTTAAAGAATATCTTACTACAAAGgtatagctttgcttttcatgctaatggctatggcatctagctctaattaataattataggttcatgcttaattaaaacgaaatgcactttcaatttccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA