Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg...

Basic information

species Zea mays
transcript GRMZM2G130987_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgt--accagcagctacagtactctgttagg
||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||     ||| | |   || ||| ||| |    | | |      |   | |||  |||  |   |||  || |  |||| || |    | | | |   || 
GTTCTATGTGGTCTTCATGCTGTCAGCTTGTGCTCTCTTCTCAAAGACATGGATTGAAGTATCTGGTTCATCAGCAAAGGATGTTGCTAAACAGCTCAAGgtaaaataaaacaaaactat-tttctatatctggtctgga----atgcagaattatcatgcaagagctacctttaaaccaccaacctttgcaatttaacag-

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G35990.1 (Glycine max), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg------
||| ||| | || || ||||| ||||| |||||  |||||||||| |||||||||||||| || |||||||| || |  |||||||| |||||||| |||||||| ||    || ||     ||||   ||  ||||   |  ||   |  ||     | |||           |  |  |||||   |    | ||||       
GTTCTATCTTGTGTTTATGCTTTCAGCTTGTGCCTTGTTCTCAAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGgtacgaactggcattca-----ttttgcataccatttccctattgac-gatatatttcttaagtaaagcagcagaatattagctaggcttgggttttagccatctt

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G17950.1 (Glycine max), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg-
 || ||  | || || ||| |||||||||||||  ||||||| || || ||||||||||| || |||||||| || |  |||||||| |||||||||||||||   ||  |   || ||| ||   |  |  | | ||  |  | ||||   |     |  | ||   |    ||     ||| |   |  | |   |   
ATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTCAAGgtatt-actgactcacgcattttgggaaatttattatttattatttttgttttgtatctgcaactttagtacttatatatagcgagcctgttttcacatca

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G34370.1 (Glycine max), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg-----------
||| ||| | || || ||||| |||||||||||  ||||||| || |||||||||||||| || |||||||| || || |||||||| |||||||| ||||||| ||| |  ||  |     |||| | ||   |||   |||   ||| |||    ||| |  |  |   |  | |||||     | |  |  | |  |           
GTTCTATCTTGTGTTTATGCTTTCAGCCTGTGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAAAGATGTTGCCAAGCAGCTTAAGgtactgactagcattga-----ttttgtatactcttt---tccccattgacat---gatatatttcttaagtaaagcagcaaaataattgttaggctttgggttttagagc

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G32680.1 (Glycine max), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcat-tggcataaagctgctggctgtaccagcagctacagtactct-gttagg--
 || ||  | || || ||| |||||||||||||  ||||||| || || ||||||||||| || |||||||| || |  |||||||| |||||||| ||||||| ||| |  | |  ||| |||    || || ||    |  ||||| | || ||| | ||   |      |  |      |   | ||  |||  | |    
ATTCTACCTTGTGTTTATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGgtactgactataacatgcattttt----gtgaatttactattttgttttgtatctggaagaacattagcacttcaatataatgagcctgttttctcatcatatt

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G32680.2 (Glycine max), 5'ss of exon 6
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcat-tggcataaagctgctggctgtaccagcagctacagtactct-gttagg--
                          |||||||  ||||||| || || ||||||||||| || |||||||| || |  |||||||| |||||||| ||||||| ||| |  | |  ||| |||    || || ||    |  ||||| | || ||| | ||   |      |  |      |   | ||  |||  | |    
--------------------------CCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCAAAGCAGCTGAAGgtactgactataacatgcattttt----gtgaatttactattttgttttgtatctggaagaacattagcacttcaatataatgagcctgttttctcatcatatt

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: AT1G78720.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatataca----catctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg---------
||| ||| | || |||||| |  | || |||||  ||||||| || || ||||||||||| |||||||||||||| || ||||| || |  || || |  ||| |      | |  |    | |  || || | ||| ||  ||  |   ||   ||   | |   |    | ||   || |  |     |    | ||||            
GTTCTATCTTGTGTTCATGTTAGCCGCGTGTGCGTTGTTCTCTAAAACCTGGATTGAAGTCTCCGGTTCATCAGCCAAAGATGTCGCCAGACAACTAAGAgtatgtttgtttgttgatcacccttgttctaagcaaagttgcggatccaattcttat---ctttgggtcttttgcatgactataactcttaaatttgtgttgatttttttcag

upper sequence: GRMZM2G130987_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv00s0551g00030.t01 (Vitis vinifera), 5'ss of exon 3
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggac-------aaatatacacatctttttatgtaaaattttggtcctg-tttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg
 || ||| |  |||| ||| || | |||||||| || ||||||||||| ||||||||||| || || || || || |  ||||| |||||||||||||||||| | |         | |||||   ||||  | | |   ||     ||||  ||| |   ||  ||  |  ||  || | |       |   ||    ||       
CTTCTATCTAATCTTTATGTTGGCTGCCTGTGCACTTTTCTCAAAGACTTGGATTGAAGTATCTGGATCCTCTGCTAGAGATGTGGCTAAGCAGCTCAAGgtatgaattctttgggactatacttgtcttaattt-tgtcatccccttcctacttttgtgctgttattgaaatgagggttttgttttgggggccaaggatc-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211338837|gb|FL045914.1|FL045914
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCANCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCNAACTTGCAGANGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|101398399|gb|EB821072.1|EB821072
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31352161|gb|CD436518.1|CD436518
EST:     GGATTGAAGTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|60344170|gb|DN211143.1|DN211143
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|50328214|gb|CO523340.1|CO523340
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|4226340|gb|AI396447.1|AI396447
EST:     AGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: AGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|21331308|gb|BQ486689.1|BQ486689
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|58029874|gb|CX725301.1|CX725301
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31352309|gb|CD436666.1|CD436666
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|83279053|gb|DV943061.1|DV943061
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|45847661|gb|CN071604.1|CN071604
EST:     GGATTGAAGTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACGAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|14244588|gb|BG840619.2|BG840619
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|4647064|gb|AI622139.1|AI622139
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACACCAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|213167499|gb|FM192311.1|FM192311
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|24768334|gb|CA403463.1|CA403463
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|33095855|gb|CF055849.1|CF055849
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|50328215|gb|CO523341.1|CO523341
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|14206751|gb|BG840429.1|BG840429
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|67012434|gb|CO441183.1|CO441183
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|60350904|gb|DN217877.1|DN217877
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|13150076|gb|BG320398.1|BG320398
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAS                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|13150010|gb|BG320332.1|BG320332
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|32934273|gb|CF039085.1|CF039085
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|60352516|gb|DN219489.1|DN219489
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|5895581|gb|AW036827.1|AW036827
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|61118440|gb|DN559401.1|DN559401
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|24767907|gb|CA403042.1|CA403042
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|211338835|gb|FL045912.1|FL045912
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|88749341|gb|DY533482.1|DY533482
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|32847495|gb|CD987176.1|CD987176
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|166454253|gb|EG303581.1|EG303581
EST:     GGATTGAAGTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGA
EST: gi|101398397|gb|EB821071.1|EB821071
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGTTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31362233|gb|CD446590.1|CD446590
EST:     GTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|5597153|gb|AI891356.1|AI891356
EST:     GTTCATCAGCAAAGGATGTTGTTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|60355360|gb|DN222333.1|DN222333
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|47962236|gb|CN844945.1|CN844945
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31360378|gb|CD444735.1|CD444735
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAA-TGGTG
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTG
EST: gi|67024923|gb|CO453672.1|CO453672
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|148936307|gb|EC880389.2|EC880389
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|67015216|gb|CO443965.1|CO443965
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31350919|gb|CD435276.1|CD435276
EST:     GGATTGAAGTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|5124246|gb|AI745982.1|AI745982
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|15080202|gb|BI388979.1|BI388979
EST:     GGATTGAAGTTTCGGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|32863571|gb|CF003253.1|CF003253
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|61118439|gb|DN559400.1|DN559400
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|31354436|gb|CD438793.1|CD438793
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|211341224|gb|FL045920.1|FL045920
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCCAG-CCATCGTGAGTCGAACTTGCAGAAGGA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCC-AGGCCATCGTGAGTCGAACTTGCAGAAGGA
EST: gi|211341223|gb|FL045919.1|FL045919
EST:     GGATTGAAGTTTCTGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCAAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|92087935|gb|EB484166.1|EB484166
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
EST: gi|60337435|gb|DN204408.1|DN204408
EST:     GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAG                         GAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA
genomic: GGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaa ... ttatatgcagGAACAACAAATGGTGATGCCAGGCCATCGTGAGTCGAACTTGCAGAAGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTATGTGGTCTTCATGCTGTCAGCCTGTGCTCTGTTCTCAAAGACATGGATTGAAGTTTCCGGTTCATCAGCAAAGGATGTTGCTAAGCAGCTCAAGgtacggacaaatatacacatctttttatgtaaaattttggtcctgtttggcattggcataaagctgctggctgtaccagcagctacagtactctgttagg

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA