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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGCCAGGATTCAACTAGAATCTGAAGCGAGGGAAGTGAACCCTTTCTTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtagctgcatgatttgtgttctcctgccccattgatgtttcggagccttacatgttctgttttcttggggaaaaatgtgttcctttgcaaggtaacctttctaagtttttttgtgctttgataattgatactcaatgcag

Basic information

species Zea mays
transcript GRMZM2G130548_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111145857|gb|EE258097.1|EE258097
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|12971278|gb|BG267403.1|BG267403
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|30052458|gb|AI065747.2|AI065747
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTACCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|213179400|gb|FM185674.1|FM185674
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|29945353|gb|CB815596.1|CB815596
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
EST: gi|211270731|gb|FL474956.1|FL474956
EST:     TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAG                         GAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT
genomic: TTCAATCCAGAATATCAGTACTAGGCAACCATTTTCCCTTCACTTGCCAGgtgagcgtag ... ctcaatgcagGAATGTGCTAGGATCGGTTTGGAGGAAGATGTCTGGATATTAGGATTGCGT