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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCGCTGAAGAATTAAGTGCCCAACTTGGGGAGCTATTCGAGGAACACCAACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatgtaacattttgtcaacttgctttacatttcacaaatacttgtctaattattttttaaccaatatcatgtcacag

Basic information

species Zea mays
transcript GRMZM2G130230_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 6
TTCCGCTGAAGAATTAAGTGCCCAACTTGGGGAGCTATTCGAGGAACACCAACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatgtaacattttgtcaa----cttgctttacatttcacaaatacttgtctaattattttttaaccaatatcatgtcacag
 || || |||||||||||||||||||||||||||||||| || ||| ||||||| ||||| || || || ||| ||||||||||||||||||||||| ||||||||| | |||  |||||||||     | |  | |  |    | |||||||| |||| || |||| || ||||  ||| ||||||
CTCTGCAGAAGAATTAAGTGCCCAACTTGGGGAGCTATTTGACGAAAACCAACTCTACAGAATTGATCACTACTTGGGAAAAGAGTTGGTCCAAAACCTGgtaatggctataa--ttttgtcaagaatgtgggatgatttcctccgaatacttgactaactacttttgaaacaatcgcatttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237092|gb|DT645006.1|DT645006
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGGACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|71449499|gb|DR830549.1|DR830549
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGGACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|67037531|gb|CO464345.1|CO464345
EST:     ATCTATACAGAATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTGTTCTTGCCTCTTTGGAACCGCGAC
genomic: A-CTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|71447340|gb|DR828390.1|DR828390
EST:     AACTATACAGGATAGACCATTACCTGNGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|89759526|gb|DY688327.1|DY688327
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|78083439|gb|DV511832.1|DV511832
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|78109778|gb|DV528194.1|DV528194
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGAC
EST: gi|71449885|gb|DR830935.1|DR830935
EST:     AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTG                         CTTGTTCTTCGTTTTGCCAACTGATTATTCTTGCCTCTTTGGGACCGC
genomic: AACTATACAGGATAGACCATTACCTGGGAAAAGAGTTGGTCCAAAACTTGgtaatggatg ... catgtcacagCTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGC