1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTTTTTAACACCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggctttaacctttttgattttttttaattaactccgcgcgcccttgtcggcggaacatgcattggcccttgactaattccttttaatatctttgttaag
species | Zea mays |
transcript | GRMZM2G128577_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAG GGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTAEST: gi|101392178|gb|EB818017.1|EB818017
genomic: CCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggcttta ... ctttgttaagGGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTA
EST: CNNNNNNNAACACCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAG GGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGGTAEST: gi|13490426|gb|BG517190.1|BG517190
genomic: CTTTTTTTAACACCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggcttta ... ctttgttaagGGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTA
EST: CGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAG GGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTAEST: gi|38688147|gb|CK145178.1|CK145178
genomic: CGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggcttta ... ctttgttaagGGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTA
EST: TTGGAAGGATCGTGCGTAGAAGCGTAGAACAG GGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTA
genomic: TTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggcttta ... ctttgttaagGGCGCTGCGACAACATGCTATGTGGCAGTGCATCCTCAAGTGAAGGGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTTTTAACACCGTTGGAAGGATCGTGCGTAGAAGCGTAGAACAGgttggctttaacctttttgattttttttaattaactccgcgcgcccttgtcggcggaacatgcattggcccttgactaattccttttaatatctttgttaag
- - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - AGAAGC