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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcattttttcttgtagccattcaattgacactagccg...

Basic information

species Zea mays
transcript GRMZM2G127941_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 7
GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccct---ttttgtactcattttt-tcttgtagccattcaattgacactagccg
||| |||||||||||||| || |||||||||||||| |||||||||||| | | |||||||||||||||| |||| |||||||| ||||||||||||||||| ||| |      | |||||    | || | |||||||||  ||    |||| |   || | |||  | ||    ||| ||   ||    || |  || || |
GCATCTTCATATACTTCCAACGATGAACCCTGATGGATTTGCTCTTAGAAGACGTGGTAATGCAAACAATGTTGACCTCAACAGAGATTTTCCTGACCAAgtcagtga------tgcatta----ttttcttcttatggaatatttggattccttttgttctttacctacttgagccttttaattatattgttaatgctggcag

upper sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G31000.1 (Glycine max), 5'ss of exon 7
GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagt-tacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcattttttcttgtagccattcaattgacactagccg--
 ||||||||| |||||||  ||||||| ||||||||||||  | | | |  || ||||||||| || ||||||||||| ||  |||||||||||||||| ||   | ||  | | || |||  |    |  ||  |||  |    | |  |       |||   | |  || |   | |  | ||    |    || | |   
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGGTTTAGTTTAAAAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatatatatatatattttaatagtaatctgtataaag---tatgttgataaagttggtttaaggttgtggaggatgctttattcttctgctggacatg

upper sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcattttttct-tgtagcca--ttcaattgacactagccg
 ||||||||| |||||||  ||||||| |||||||| |||  | | |||  || ||||||||| || ||||||||||| ||  |||||||||||||||| ||   |  ||  |||  | ||    |  | |   ||  | |  ||           ||     ||||| || || || |  ||  ||| | |   |  | |  
TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatag---taatctgtatacagtatgttgataaagttggttgaaggtcattgttactatgaaatcaaattctaatattagaatcaa

upper sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcatttttt---cttgtagccattcaattgacactagccg--
 ||||| |||||||||||  | ||||| |||||||| ||| | |||||  ||| ||| |||||||| ||||||||||| ||  | |||||||| || || ||      ||| | | ||| ||     |     ||||     | | |||   ||   |||   |  |||||      |||| |   |   |  | | | |     
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtat----cttttctgcatcac-ttgttcccttttatttggacatttacaatccagattgagtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa