1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTGACCTTGCCTCTCAGTGCCTACAGTACGAACCTAGGGATCGTCCCAACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtcacaattttatccttctcagttggaaatctttttgtgctccgtcatcgattgtttatcgtgatgtgattcacgtcttccatgctacaactgttaccttttttggaaacgaggcattttgtttttgtttttacctacgtctggtacattttttccattttaaaatgacaaacag
species | Zea mays |
transcript | GRMZM2G127050_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACACTAAAAAGCTAGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCTEST: gi|32919403|gb|CF024215.1|CF024215
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
EST: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCTEST: gi|32919355|gb|CF024167.1|CF024167
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
EST: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAG GTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
genomic: ACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtca ... tgacaaacagGTACCATCCTACGAGATGCTTGGCATTCCGAAGCATGAAGAAGAAGCACCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGACCTTGCCTCTCAGTGCCTACAGTACGAACCTAGGGATCGTCCCAACACTAAAAAGCTGGTTTCCGTACTTGAGCCCTTGCAAATAAAATCAGAGgtaacagtcacaattttatccttctcagttggaaatctttttgtgctccgtcatcgattgtttatcgtgatgtgattcacgtcttccatgctacaactgttaccttttttggaaacgaggcattttgtttttgtttttacctacgtctggtacattttttccattttaaaatgacaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG