Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatccacattgcgtagtgtgtgccgcgtgaagggagaagaaaagaaaagaaaagaaaaacgctgcctggcatggcatgcatgcatgtgcgtgtgctcatctcatctcatctcgtcag

Basic information

species Zea mays
transcript GRMZM2G126900_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126900_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g36560.1 (Oryza sativa), 5'ss of exon 7
CCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatccacattgcgtagtgt--gtgccgcgtgaagggagaagaaaagaaaagaaaag-----aaaaacgctgcctggcatggcatgcatgc----atgtgcgtgtgctcatctcatctcatctcgtcag
||  ||||| ||||||||||||||||| |||| |||||| |||||||| |||||  |||| || |||||||| |||||||| |||||||||||||||||||| |  |  |||  | | | ||||   | |  |   ||  |   |  |  ||  ||| ||      |       | |   |  ||   |     |    ||||   |||| |  |      |  ||   ||||
CCTGAACCCAAAGCTCAACACCAAGTTTGGGGCCTACTCCGAGGGCTGTGGCCTTGACAATGTTCTCATGTCCTGGGGCCATGACGACTACATGTACCTGgtaaa-acacacggttcatcgtgtcgattcatcaccaattgcataccatggagcagagaaatcttcagttctagtactgaggttgtagttttctctgaaatgttgatgtgtttcttgttcttgttcatctcag

upper sequence: GRMZM2G126900_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S94_154V6.1 (Physcomitrella patens), 5'ss of exon 6
CCACAACCCGAAGCTCAACACCAAGTTGGGGGTCTACTCGGAGGGCTGCGGCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatccacattgcgtagtgtgtgccgcgtgaagggagaagaaaagaaaagaaaagaaaaacgctgcctggcatggcatgcatgcatgtgcgtgtgctcatctca-tctcatctcgtcag--------------
 || || ||  |  |    |||||||||||  | |||   ||    ||||| ||  |||| ||| ||||||| |||||||||||||| |||||||||| |||     | |    | |  |       || |||   |                |      | |   ||   |  |||| |   |  |  | |     |     | ||| | || | ||  ||               
GCATAATCCCCAATTTTCTACCAAGTTGGGAATTTACCAAGAAAAGTGCGGGCTTGACAACGTGGTCATGTCCTGGGGCCACGACGAGTACATGTACCAGgtattacttcgaggtccccaacac-caccacgttctgtcttcttgtgtt---tgctcgcgacattactaattttcatgtccaaccggtctattttattctatttttcactttcttttctacaaacctgatgatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31363556|gb|CD447913.1|CD447913
EST:     GCCTCGACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|88752150|gb|DY536291.1|DY536291
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGC
EST: gi|78076467|gb|DV504901.1|DV504901
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|76289997|gb|DV029565.1|DV029565
EST:     CCTNCA-CAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: CCT-CAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|148941675|gb|EC886622.2|EC886622
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|78119916|gb|DV538300.1|DV538300
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|148960892|gb|EE011574.2|EE011574
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCCTTCTTTCCGCGGGGCTGTTCATCAT
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCC-TTCCTTCCGCGGGGCTGTTCATCAT
EST: gi|45847402|gb|CN071345.1|CN071345
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|60339537|gb|DN206510.1|DN206510
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|76923451|gb|DV169494.1|DV169494
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|15554177|gb|BI644175.1|BI644175
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|93281927|gb|EB674191.1|EB674191
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|60397791|gb|DN230607.1|DN230607
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|78112469|gb|DV530863.1|DV530863
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACTTGTACCTG                         GGGGCCA-GGAGAACAA
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAA
EST: gi|15057218|gb|BI361190.1|BI361190
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|93016474|gb|EB641994.1|EB641994
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|78076468|gb|DV504902.1|DV504902
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|60359616|gb|DN226589.1|DN226589
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|78119915|gb|DV538299.1|DV538299
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|40303359|gb|CK347746.1|CK347746
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|14996904|gb|BI319057.1|BI319057
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|67041064|gb|CO467319.1|CO467319
EST:     GCCTCGACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGGCAAGGGAGA-CAAGTGCACCCTTCCTTCCGCGGGGCTGNTCATCAT
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGG-AGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCAT
EST: gi|149010866|gb|EE042255.2|EE042255
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|78088525|gb|DV516918.1|DV516918
EST:     CCCTCA-CAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: CC-TCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|76923453|gb|DV169495.1|DV169495
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|154130490|gb|EC872226.2|EC872226
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTG
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTG
EST: gi|149100878|gb|EE186973.2|EE186973
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCCTTC-GCGGGGCTGTTCATCAT
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCC-TTCCGCGGGGCTGTTCATCAT
EST: gi|50333620|gb|CO528746.1|CO528746
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|71325953|gb|DR799659.1|DR799659
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCA
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCA
EST: gi|60396286|gb|DN229155.1|DN229155
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|60347921|gb|DN214894.1|DN214894
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|14996932|gb|BI319072.1|BI319072
EST:     GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
EST: gi|211354362|gb|FL217076.1|FL217076
EST:     GCCTCGACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTG                         GTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC
genomic: GCCTCAACAAGGTGCTCATGTCATGGGGCCACGACGACTACATGTACCTGgtcagtatcc ... atctcgtcagGTGGCCAAGGAGAACAAGTGCACCCTTCCTTCCGCGGGGCTGTTCATCATC