Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGACAAGAAGAAAGAGAGACCGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACATTCACTCGATATAGgtgtggttatctcctgttgcgagataatatgctttgttgtctttgttccattctcactgggctcatcttgtttgttgtcatgtttactccag

Basic information

species Zea mays
transcript GRMZM2G126795_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 5
GCAGACAAGAAGAAAGAGAGACCGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACATTCACTCGATATAGgtg---tggttatct---cctgttgcgagataatatgctttgttgtctttgttccattctcactgggctcatc------ttgtttgttgtcatgtttactccag
| || |  || |||||||| |  ||  |||| |||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||    || |||| |   | | ||   | || ||   | | || ||  || | || |  ||| | |||| |||      |||||   |||||| | | || |||
GTAGGCTGGAGGAAAGAGACATAGTAACAATAAATAAAGAAGGTTATCATGCAGGACTTGAGGATTTCCAGTCTGTGCTAACAACATTCACACGATATAGgtccgctgattatttgtcctttttagcacattatgatcatggtagtggttatgcc-tattcatttggcttatcattcttttgttctctgtcatttatgcttcag

upper sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 5
---GCAGACAAGAAGAAAGAGAGACCGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTGTGCTAACAACATTCACTCGATATAGgtgtggttatct----cctgttgcgagataatatgctttgttgtctttgttcc-attctcactgggctcatcttgtttgttgtcatgtttactccag--------------------------------------------------------------------------
     | ||| |||||||| || ||   | | |    | ||||||| ||||||||||||||| |||||||||| ||||||||||| || || || |||||||||| |   ||| |    | | ||     |  || || |||    ||    ||||  ||  |  |        ||| | || |||| |  || || |                                                                            
AACATAAACAGGAAGAAAGGGACACAAATTCTA---GTCGAGAAGGTTATCATGCAGGTCTTGAGGATTTCCAATCTGTGCTAACTACGTTTACACGATATAGgtatatatattttgatcattttcttccactatttgtttttagttccacattcctgtttcccttttaggagccttctgtgatgtccttattgctgcttatctgcattacaaattttcggataatttcttcaccctttgttgcttacatcctctatttggttgtttgaattag