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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAATGCGAGAGTTTTGTGTTAATTCAGTGGTTGTCTCTACAGGAAACACATTGCAGGGGATCTTTACgtaagcattctatgttagtaaaacagtattgtccatgatccctttctaactgttggtgttgtataattatgttctgcag

Basic information

species Zea mays
transcript GRMZM2G126656_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126656_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g07190.1 (Oryza sativa), 5'ss of exon 6
CGCCTACAGATCCTGTGTGTGTAGCAGCACAAAAAATGCGAGAGTTTTGTGTTAATTCAGTGGTTGTCTCTACAGGAAACACATTGCAGGGGATCTTTACgtaagcattctatgttagtaaaac-agtattgtccatgatccctttctaactgttggtgttgtataattatgttc---tgcag
| ||| |||| || |||| ||||||| |||| |||||||| || ||| | |||||||| ||||||||  |||||||||||||| | ||||||||||| |||| |||| ||||| ||||||   | | |||| |  |  |   | || |   | ||  |  | ||    |   | |   |||||
CTCCTTCAGACCCAGTGTATGTAGCAACACAGAAAATGCGTGAATTTCGAGTTAATTCGGTGGTTGTTGCTACAGGAAACACACTACAGGGGATCTTCACgtgagcaatctattttagtacttctactattatttacaacttccttatttttcttc-tactttactgatgcatccaaatgcag