1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AACTGGCCACCGTTTTTCCCCATCATCCATAACGATATTGGCAACGAGATACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAGgtaataagtttcttttatcctttatcgttttttccctgcgatcgggcatagcctgcatttcattaaaaaagacaggaagtttgaaaaacattaaacattc...
species | Zea mays |
transcript | GRMZM2G124918_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAG GGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGGEST: gi|71766083|gb|DR964020.1|DR964020
genomic: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAGgtaataagtt ... tgtctggcagGGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGG
EST: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAG GGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGGEST: gi|78111675|gb|DV530072.1|DV530072
genomic: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAGgtaataagtt ... tgtctggcagGGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGG
EST: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAG GGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGG
genomic: ACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAGgtaataagtt ... tgtctggcagGGTTGGTCGTGTGCCTGTTTTGGAACATAATCTGCGTTACGGCTGCCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGGCCACCGTTTTTCCCCATCATCCATAACGATATTGGCAACGAGATACCTGTCCATCTGCAAAGTACACTGTATGTCGCATTCGCGTCACTCTTAGgtaataagtttcttttatcctttatcgttttttccctgcgatcgggcatagcctgcatttcattaaaaaagacaggaagtttgaaaaacattaaacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaca