1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTAGAAGGAATGCTTTCTCATATGAGGTGGGAGTGCAGATGGTTGAGATTTATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAGatatccttccttcacccacctcccccccccccaaaaaaaaaatgtttactttctgttagagtatctctcatgattgcatttttagtacttgcatactgtcagacatgcacagaaaaaacatgttcttcctgacaaaaagaaac
species | Zea mays |
transcript | GRMZM2G124883_T01 |
intron # | 6 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAATGGACTTGTTGTCCCTGATGCEST: gi|76018056|gb|DT945226.1|DT945226
genomic: TATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAGatatccttcc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAATGGACTTGTTGTCCCTGATGC
EST: TATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAG ACTTGGAATTTGGAGTACATCTCAGCCTAATGGACTTGTTGTCCCTGATGC
genomic: TATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAGatatccttcc ... aaaaagaaacACTTGGAATTTGGAGTACATCTCAGCCTAATGGACTTGTTGTCCCTGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAAGGAATGCTTTCTCATATGAGGTGGGAGTGCAGATGGTTGAGATTTATAACGAGCAAGTGCGGGATCTTCTCTCAAATGATATTGCACAAAAAAGatatccttccttcacccacctcccccccccccaaaaaaaaaatgtttactttctgttagagtatctctcatgattgcatttttagtacttgcatactgtcagacatgcacagaaaaaacatgttcttcctgacaaaaagaaac
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