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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAGgtgctgcttttattcccataccgtggcacttttaccgtaagaatcttcgtttgccatggaggtcgattaatcagttacctctctcttgcaatgcag

Basic information

species Zea mays
transcript GRMZM2G124557_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G124557_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g40140.1 (Oryza sativa), 5'ss of exon 8
GACAAAGAGAACGGCGGCATTTCAGATAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAGgtgc---tgcttttattccca-----taccgtggcacttt----taccgtaagaatcttcgtttgccatggaggtcgattaa--tcagttacctctctcttgcaatgcag
||||| || || || || ||||||||||||||||||||||| || |||||||| ||||| ||||||||| |||||||||    |  || ||  | ||     || | | ||  | |    ||  |   ||||         | || |      |      ||||||  | || | |||||| ||||
GACAAGGAAAATGGTGGAATTTCAGATAGACCAGATAATGCGGTAGATATCTACCACACATACTTTGGAGTTGCAGgtgtttatatttctaaccgcagttcttatcatagcgatatattatagtgcgtgaataaattgaaactatagtcccttagcggattcagttggcccttt-ttgcaa-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211265935|gb|FL477027.1|FL477027
EST:     TAGGCCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAG                         GGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG
genomic: TAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAGgtgctgcttt ... tgcaatgcagGGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG
EST: gi|71443998|gb|DR825048.1|DR825048
EST:     TAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAG                         GGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG
genomic: TAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAGgtgctgcttt ... tgcaatgcagGGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG
EST: gi|89250321|gb|DY622107.1|DY622107
EST:     TAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAG                         GGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG
genomic: TAGACCAGATAATGCAGTCGATATCTATCACACGTACTTTGGAATTGCAGgtgctgcttt ... tgcaatgcagGGCTTTCATTAATGGAGTACCCCGGGGTGAAGCCTTTGGATCCTGCCTATG