1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTAAGGGTTTTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAGgtttgtacactgctacaagcagcgtttcctccctattagtttagatcccgatcatctagtgatctaaataatttctgtggacgcttaggagggtacttgtttttttctgtag
species | Zea mays |
transcript | GRMZM2G123537_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAG GCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTTEST: gi|18659516|gb|BM500379.1|BM500379
genomic: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAGgtttgtacac ... ttttctgtagGCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTT
EST: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAG GCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTTEST: gi|32867179|gb|CF006861.1|CF006861
genomic: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAGgtttgtacac ... ttttctgtagGCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTT
EST: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAG GCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTT
genomic: TTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAGgtttgtacac ... ttttctgtagGCTTTGGAAGTTGTTGAAGTGGAACAACAAACACAAATGGCTTTGGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACGGAACTGAAACGCAAACGAAGCAACTGGCAACCCTGCTTAAGGGTTTTGTGTTACAGCTGAGTCTTCAAATGTATGGCTGCCGGGTGATTCAGAAGgtttgtacactgctacaagcagcgtttcctccctattagtttagatcccgatcatctagtgatctaaataatttctgtggacgcttaggagggtacttgtttttttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA