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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGGGACCTTCTCATCGACGGCCACTCCACCGGTTTCTGCGCCAAGGGGTGCGCTGCCATCGTCGACTCCGGGACTTCCTTGCTCGCTGGCCCAACGgtatgtcgttctctgtctccactctccgtccataccgatgatcctcctcctcaagtttctctgtacttgtactttggatgaagttctctaacagacagcagacatgtctgatgtttcttgcag

Basic information

species Zea mays
transcript GRMZM2G123029_T05
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123029_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g04630.5 (Oryza sativa), 5'ss of exon 6
CATGGGGGACCTTCTCATCGACGGCCACTCCACCGGTTTCTGCGCCAAGGGGTGCGCTGCCATCGTCGACTCCGGGACTTCCTTGCTCGCTGGCCCAACGgtatgtcgttctctgtctccactctccgtccataccgatgatcctcctcctcaagtttctctgtacttgtactttggatgaagttctctaacagacagcagacatgtctgatgtttcttgcag
||||||||| || || || || |||||||| || || ||||| || || || || ||||| || ||||||||||| ||||||||||| ||||| ||||| ||||||  || |   | ||  |         || | |||   | |  |  |   |||| |   |  ||  |||  |    |||||  |   |  | |  |   |                   
CATGGGGGATCTCCTTATTGATGGCCACTCAACTGGCTTCTGTGCAAAAGGCTGTGCTGCTATTGTCGACTCCGGAACTTCCTTGCTTGCTGGTCCAACAgtatgt-attattaatatcttcaaattaaggatccagatcgcctttatattt--gtttgttcatggtt--actgagctcaaagtttccatgctaagataaagtag------------------