1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTCAAAATTGAACCCCAGTATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagtttttctgccattaattatttttattctgtaatttccactgaatccctagatatttttgttagatgcctatgcatgtgttcttgttgtattccgt...
species | Zea mays |
transcript | GRMZM2G122935_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCEST: gi|76011673|gb|DT938843.1|DT938843
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCEST: gi|76017397|gb|DT944567.1|DT944567
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCEST: gi|31628335|gb|CD526557.1|CD526557
genomic: TGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: TCAAGAATGACCCTGACCCAAGCAACTCA GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGCEST: gi|32928506|gb|CF033318.1|CF033318
genomic: TCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
EST: TTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCA GCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
genomic: TTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagttttt ... ggaaatgcagGCGTCAGCTGAAGCAGACGCATACTTTTGCTTTGTCGAATTGTTGAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAAAATTGAACCCCAGTATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTTTATTTTATGTATTCAAGAATGACCCTGACCCAAGCAACTCAgtaagtttttctgccattaattatttttattctgtaatttccactgaatccctagatatttttgttagatgcctatgcatgtgttcttgttgtattccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA