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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaaagcaattattcgttttgttgctattttttttctgagtgaattaactagttcatgctaattgcatttatag

Basic information

species Zea mays
transcript GRMZM2G122135_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaaagcaattattcgttttgttgctattttttttctgagtga-attaactagttcatgctaattgca-----tttatag
||| |||||||| || || || |||||||| ||||| || ||||| ||||| |||||||||||| | |||||||| || ||||||||||| ||||| ||||||  |     |    | || || |||    |     | |||||| | | ||| ||  | | |      |||||     |||  ||
TGAAGCTGAAGTACGGATTGCAGCTGCTGGGAAAGTGACCAAGTTTTGCCGGATATTAAATCCAGATCTTTCAATTCAGCATATTCTTCCTTGCGTGAAGgtgtctctttgg----ttttggtcttgaaatt--cagtattctgaattatatttacaggctaaaatactttgcaagatctttgcag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtg-ggt----gcaaagcaattattcgtttt----gttgctattttttttctgagtgaattaactagttcatgctaattgcat-ttatag
|||||||||||| || || || |||||||| |||||||||||||| | |||||||||||||||  | ||| | || || |||||||| || || || |||||   ||    | |||  ||||     | ||    |||   |||| |  |   |||    | || |  | ||     |||| |  |||||
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATATTAAATCCCGATCTTGCGATTCAGCATATTCTACCATGTGTGAAGgtacagtcacagtaaaaaaattgggattcttagaggttaacatttatgatactagtatgattac-aactgataaagtttgcctactatag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc-------aaagcaattat-------tcgttttgttg-ctat---------tttttttctgagtgaattaactagttca---tgctaa--ttgcatttatag-----------------------------
||||||||||||||| ||||| |||||||||||||| || ||||| ||||| || ||||||||| | |||||||| || ||||||||| | || || |||||             |||| ||||||       | || ||  ||  |||          |||| |  |  |   ||    | ||||   ||||||  ||  ||||| ||                             
TGAGGCTGAAGTGCGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTTCAATTCAGCATATTCTTTCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattagtattactgattatatacagaggcttttcttggttttggttggtcaattcagtatgctaaatttatatttacaggtttaagttctttgaaacaacttttgcag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 6
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc-------aaagcaattatt-cgttttgttgctatt--ttttttctgagtgaattaactagttcatgctaattgcatttatag------------------------------------------------
|||||||||||| || ||||| |||||||||||||| || ||||| ||||| || ||||||||| | ||| |||| || ||||||||||| || || |||||             |||| ||||||  |   ||  |  || |  || | |      |  ||   | |||   | |  |    |   |||                                                
TGAGGCTGAAGTACGCATAGCAGCTGCTGGAAAAGTGACCAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatctttggaaaagaaattataacacattaatattactgattatatacagaggctttccttggttttggtttgtcaattcagtaggataaatttatatttacaggtttaagttctttgaaacaacttttgcag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 5
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtg----caaagcaattattcgttttgttgctattttttttctgagtgaattaactagttcatgctaattgcatttatag-------
|||||||||||| || || || |||||||| |||||||||||||| | |||||| ||||||||  | ||| | || || |||||||| || || || |||||  ||     ||    ||  ||| |  ||||| |   ||    | |  |  | |    |  ||    || ||    |||           
TGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTTTCCCGCATTTTAAATCCTGACCTTGCCATTCAGCATATTCTACCATGTGTGAAGgtatgtagtcacagtaaaaaaattgggattgttacaggttaacatttatgatactagtttgattacaactgatcaagtttgcctactatag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 6
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaaagcaattattcgt---tttgttgctattttttttctgagtg--aattaactagttcatgctaattgcatttatag
||||||||||||||||||||| || || |||||||| || |||||||| ||  | || |||||| ||||| | || || || || ||||| || || |||||  |        |||| |   |      |||| |   | |   |||  |   |||   ||  | ||| || ||  |  |   ||
TGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGgtaagactccttaaattctatataaacgagttgtttgatgtcccctgtctcgtaatattctgatacatactgatgtc--tggcag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgc----------aaagcaattattcgttttgt-tgctattttttttc-tgagtgaattaactagttcatgctaat-tgcatttatag----------------------------------
|||||||||||| |||||||| |||||||| ||||||||||| ||||| |  || ||||||||| | ||| |||| || ||||||||||| || || ||||||    |          | ||   || |  || || | |  | | |  |||  |    ||| | ||||  |   |||||| ||||  | | |                                  
TGAGGCTGAAGTACGAATAGCAGCTGCTGGCAAAGTAACTAAATTCTGTCAGATCTTAAATCCAGAACTTGCAATTCATCATATTCTTCCCTGTGTAAAGgtgctcacgtttattaaaagagtgtttctctgtattatataatgtctccttttgttcacgaacttacta--ttgagctaatgtgcacctgttgagctttctcaatatttggtgatgtcattttgtag

upper sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 7
TGAGGCTGAAGTGCGAATAGCGGCTGCTGGAAAAGTAACTAAGTTCTGCCGCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtggg------tgcaaagcaatta---ttcgttttgttgctattttttttctgagtgaat-taactagttcatgctaattgc-atttatag-------------------------------------------------
|||||||||||| || ||||| ||||| ||||||||||| || || ||||| || || || ||| | ||| |||| || ||||||||||| || || |||||         ||||||    |||   ||| || || |   |  ||| || || |   |  |     | |  |  | |   |   ||||                                                   
TGAGGCTGAAGTACGCATAGCAGCTGCAGGAAAAGTAACAAAATTTTGCCGGATTTTGAACCCAGAACTTGCAATTCAGCATATTCTTCCTTGTGTGAAGgtatacatgcttgcaaaagttttaagtttcattatgctatgaagtttcttatgggcttacatggtggggttctatttaccactgcttatctgtcatctgtcttaaaatttgtgactagattagaaaatgtccttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929087|gb|CF033899.1|CF033899
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|6564198|gb|AW231820.1|AW231820
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCG
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCG
EST: gi|31356310|gb|CD440667.1|CD440667
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|211334572|gb|FL404959.1|FL404959
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAKATTCATCCCASCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|5566949|gb|AI881860.1|AI881860
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|40336631|gb|CK370701.1|CK370701
EST:     ATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: ATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|67034361|gb|CO462911.1|CO462911
EST:     GCATATTANATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|32914759|gb|CF019571.1|CF019571
EST:     ACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGGTTCGTTCAGCTTTAGCCTCAGT
genomic: ACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCAT-GTTCGTTCAGCTTTAGCCTCAGT
EST: gi|24763712|gb|CA398883.1|CA398883
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|32941448|gb|CF046267.1|CF046267
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|211221964|gb|FL414368.1|FL414368
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCATATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|32919959|gb|CF024771.1|CF024771
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGGTTCGTTCAGCTTTAGCCTCAGT
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCAT-GTTCGTTCAGCTTTAGCCTCAGT
EST: gi|32928593|gb|CF033405.1|CF033405
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
EST: gi|31361222|gb|CD445579.1|CD445579
EST:     GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAG                         GAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC
genomic: GCATATTAAATCCACAGCTTTCAATCCAACATATTCTTCCGTGCGTTAAGgtgggtgcaa ... gcatttatagGAATTGTCATCAGATTCATCCCAGCATGTTCGTTCAGCTTTAGCCTCAGTC