1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgcacactctatttatgtgctttttacatattctacaattataatacattggcgctgtagtgctattaccatattctacattttatatagaaa...
species | Zea mays |
transcript | GRMZM2G121826_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGCEST: gi|149103589|gb|EE288989.2|EE288989
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCNAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTTGEST: gi|9952536|gb|BE639119.1|BE639119
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTT-G
EST: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCAT GCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
genomic: GCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgc ... ttctctgtagGCACTCGACCTTATAAGAGGGAAGAACTTTCTAGTGCTGATGGATTCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGTAAGTCCTGAGAGTGTGGTTTACAGTTTTGGCACTGTCTTGCTTGATCTCCTGAGTGGAAAGCACATTCCACCAAGTCATgtaagtttgcacactctatttatgtgctttttacatattctacaattataatacattggcgctgtagtgctattaccatattctacattttatatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA