1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTGTTCCATATCCATCATTGCCCAAGAAAGAAAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttttcttagtagttagtatcattatggtgtctagagctgtgtttgttctgaacatgaaaggtatccagtcaggcttgaacacaaatgcttaggccttaacgctataatcatattctttgtctctgaaatgcag
species | Zea mays |
transcript | GRMZM2G121223_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGGEST: gi|116813756|gb|EC856238.1|EC856238
genomic: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
EST: AAA-CGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTCA-AGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGEST: gi|32799074|gb|CD951310.1|CD951310
genomic: AAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATT-AGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTG
EST: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGGEST: gi|211054891|gb|FL423029.1|FL423029
genomic: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
EST: GTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTWACTTTGGEST: gi|31910875|gb|CD651642.1|CD651642
genomic: GTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
EST: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGGEST: gi|86470541|gb|DY236911.1|DY236911
genomic: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
EST: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTTTTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGGEST: gi|211089789|gb|FL379367.1|FL379367
genomic: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
EST: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTG TTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
genomic: AAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttt ... tgaaatgcagTTCAATCGCCTAAACATGTGGGTCAGCAATCTGCGTGTGAAGTAACTTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTTCCATATCCATCATTGCCCAAGAAAGAAAAACCGAGGCGTGTGGAGCTGTACTTCTCAAGTTGGCGTATTAGAGCTGgtaacttttttcttagtagttagtatcattatggtgtctagagctgtgtttgttctgaacatgaaaggtatccagtcaggcttgaacacaaatgcttaggccttaacgctataatcatattctttgtctctgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT