1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAGCGAAACCCATGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccagtttcatgtttctaattctcaacaagtgtagctgtgagcctgtgacttttatcaatttttgcataagtcatggttattgttgagggtatag...
species | Zea mays |
transcript | GRMZM2G121176_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCCGAGCTTCTATCAAGAAGGGCCCCCWCCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|60358448|gb|DN225421.1|DN225421
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|76912444|gb|DV164735.1|DV164735
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|17930498|gb|BM267458.1|BM267458
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|60352413|gb|DN219386.1|DN219386
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|71441125|gb|DR822175.1|DR822175
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|14243387|gb|BG841044.2|BG841044
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|211056169|gb|FL127767.1|FL127767
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAT GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|78120261|gb|DV538645.1|DV538645
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|60343498|gb|DN210471.1|DN210471
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGGEST: gi|116829398|gb|EC867304.1|EC867304
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
EST: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAG GTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
genomic: TGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccag ... ttatgtcaagGTGCCTCCTACCCGTGCCAAATCGCCAAAGTTTACAAGTTCAAGGAGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTTGCTTTAAAACAACTAAGGAAGTCATTGGTGATTAGAGCGAAACCCATGCCAAGCTTCTATCAAGAAGGGCCCCCACCAAAGGCTGAACTGAAGAAGgtaattccagtttcatgtttctaattctcaacaagtgtagctgtgagcctgtgacttttatcaatttttgcataagtcatggttattgttgagggtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG