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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgctttgtttaatctaatttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccag

Basic information

species Zea mays
transcript GRMZM2G120857_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g16900.3 (Oryza sativa), 5'ss of exon 7
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgct-ttgtttaatctaatttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccag
|||||||||||||||| ||| | |||||||||||||| |||||||| |||||||||||||| ||||||||| |||| || ||||||||| | ||||||||||||| ||| | ||||||  ||||      |    |   | ||   |||   |    |  | ||| |  | | ||||||
ATCCTGGTCTTTTTGATGTACTGGTGATGCCAAATCTTTATGGTGATATTATTAGTGATCTTTGTGCTGGTCTGATTGGAGGCTTGGGCTTGACACCCAGgtaaatttgttattgtttgttctatcaatttgacatccaggtaatacaacgccaactaactattt-tgcactctcccag

upper sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G20790.1 (Glycine max), 5'ss of exon 5
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgctttgtttaatcta-atttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccag
||||||  ||||| || ||| |||||||||| || || |||||||| ||||||||||| || |||||||| ||| | ||||| |||||  ||||||| |||||  |||  | | ||| ||| | |      |     |    |    |    || ||| |  ||| | | |||| |   
ATCCTGCACTTTTCGATGTACTAGTGATGCCTAACCTTTATGGTGATATTATTAGTGACCTTTGTGCTGGCTTGGTTGGGGGATTGGGTTTAACACCAAGgta--ctttttgtattttatccatagaaatgtaaaactctcaattatatcgtctgacaatattttatgtcttttgcag-

upper sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT5G03290.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgctt--tgtttaatctaatttcct--tgggtattgatacagcaaaagctcacatttgtttg----tttattttcccag------
| || |  |||||||| || || ||||||||||| || || |||||||||||||| ||||| ||||| || ||| | || ||  | ||  | || || |||||||    |||  |  || ||||  | |  |  ||    ||  ||     |      ||||    ||      ||||| ||   |      
ACCCAGCACTTTTTGATGTCTTGGTGATGCCAAACCTGTACGGTGACATTATTAGCGATCTGTGTGCCGGATTGGTTGGAGGACTAGGATTGACTCCAAGgtaaaaacacttgttccttcatcttgtgtaatagtgatctttagtatgattatgagctacatcatcttaaggccttattatctttgacgcag

upper sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G09810.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaa-acttg---ctttgtttaatctaatttccttgggtattgataca--gcaaa-agctcacatttgt-ttgtttattttcccag
| || |  |||||||| || || |||||||||||||||||||| || ||||| || ||| | ||||||||  |  | |||||  | || || || || |||||| | |||   ||| || | |   | | |  |   ||||  | |    ||||  | || |   |  | || | | || | ||||
ACCCAGCACTTTTTGATGTCTTGGTGATGCCAAATCTCTATGGAGATATTATCAGCGATTTGTGTGCTGGACTTGTTGGGGGACTAGGACTGACTCCTAGgtaacatttgtttcttcgtctcacagattattgtctagtatgaaaatgaggcaatcatcttatgctcttattatgttttgttccag

upper sequence: GRMZM2G120857_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv08s0040g01700.t01 (Vitis vinifera), 5'ss of exon 5
ATCCTGGTCTTTTTGACGTATTAGTGATGCCAAATCTCTATGGTGACATTATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgctttgtttaatctaatttccttgggtattgatacagcaaaagctcacatttgtttgtttattttcccag
||||||  |||||||| || || |||||||| || |||||||||||||||||||||||||| |||||||| ||||| |||||  | ||| ||||||| |||||  |||  ||| ||  |||   |||  ||   |||   |     | |  ||||||| | || |  |   | | |||
ATCCTGCGCTTTTTGATGTGTTGGTGATGCCTAACCTCTATGGTGACATTATTAGTGATCTCTGTGCTGGCTTGATTGGGGGACTAGGCTTAACACCAAGgtat-cttcatttattctatcatctttaattta-tatgattcatatagatcctcacatct-ttcggcttcctacacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37380928|gb|CF627310.1|CF627310
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|76019790|gb|DT946960.1|DT946960
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|211101475|gb|FL457329.1|FL457329
EST:     ATTAGTGATCTATGTGCTGG-TTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|110194437|gb|EC876335.1|EC876335
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|211216460|gb|FL469131.1|FL469131
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTT-TCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|31250098|gb|CD219122.1|CD219122
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGTAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|74239665|gb|DT647579.1|DT647579
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|23199568|gb|BU582133.1|BU582133
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|87155757|gb|DY400546.1|DY400546
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|29544695|gb|CB605075.1|CB605075
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|32915735|gb|CF020547.1|CF020547
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|33103704|gb|CF063664.1|CF063664
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|16925630|gb|BM078698.1|BM078698
EST:     CGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: CGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|211039065|gb|FL478477.1|FL478477
EST:     AGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: AGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|29167895|gb|CB411155.1|CB411155
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|9731686|gb|BE510438.1|BE510438
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTG
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTG
EST: gi|211333619|gb|FL125157.1|FL125157
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGG
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGG
EST: gi|166704216|gb|EG154128.1|EG154128
EST:     CCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: CCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|37381420|gb|CF627593.1|CF627593
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|37384800|gb|CF629499.1|CF629499
EST:     NTTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: -TTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|31250137|gb|CD219161.1|CD219161
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGTAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
EST: gi|78109385|gb|DV527801.1|DV527801
EST:     ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAG                         TTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC
genomic: ATTAGTGATCTATGTGCTGGTTTGATCGGGGGCTTGGGCCTAACACCCAGgtaaacttgc ... attttcccagTTGCAATATTGGTGAAGGTGGCATTTGTCTGGCAGAAGCTGTTCATGGTTC