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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagatcacgacacttaaccagtatgtgtgtctaattgactttgttgagctgtttgaaattctaatcatgagcttgcag

Basic information

species Zea mays
transcript GRMZM2G120517_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120517_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g35520.1 (Oryza sativa), 5'ss of exon 6
ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagatcacgac--acttaaccagtatgtgtgtctaattgactt-----------tgttgagctgtttgaaattc-taatcatgagcttgcag
|||||||||||||| ||||||| || ||||||||| ||||||| ||||| ||||| ||| ||||||||||||||| || |      | |||||||| |||| |  | | |||  ||           ||||||| ||  ||     |   ||  || || | |||
ATGCTGGCCCAAGTGCACCTGCGGATCACTTGAGGAAGGTATTTTACAGGATGGGTCTTGATGACAAGgtgtgcaaatgagattctagttaaccag-atgttttcccatttgctttgttttatgtgatgttgagttgcatgtgccccgcgatgctgtgcctacag

upper sequence: GRMZM2G120517_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT1G77490.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGCTGGCCCAAGTTCACCTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgt-gtgcagatcacga-cacttaaccagtatgtgtgtctaattgactttgttgagctgtttgaaattctaatcatgagcttgcag
||||||| ||   |||||| ||||| || ||||| || || |||||||||||||| ||| ||||||||||  |   |||   |  | |||      |||   |||| ||      |  ||  | | ||   |||  |  |  ||| |   |||
ATGCTGGACCTCCTTCACCAGCTGATCATTTGAGAGATGTTTTCTACAGAATGGGACTTGATGACAAGgttattttgattttgttctcttttgtgttattcatgtcaaacgtgaatatttttgttattctgaatattctttttga-caaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342201|gb|DN209174.1|DN209174
EST:     TGCTGACCAC-TGAGGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: TGCTGACCACTTGA-GGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|24934386|gb|CA452604.1|CA452604
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|71327463|gb|DR800349.1|DR800349
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|67022725|gb|CO451474.1|CO451474
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|101393103|gb|EB818482.1|EB818482
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|18181579|gb|BM382789.1|BM382789
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|60397958|gb|DN230774.1|DN230774
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|7238058|gb|AW573325.1|AW573325
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|74246091|gb|DT654005.1|DT654005
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|60349847|gb|DN216820.1|DN216820
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|211351874|gb|FK984289.1|FK984289
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|76920121|gb|DV168019.1|DV168019
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|60342528|gb|DN209501.1|DN209501
EST:     CTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|71759931|gb|DR957868.1|DR957868
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|88753851|gb|DY537992.1|DY537992
EST:     TTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
EST: gi|7145161|gb|AW506642.1|AW506642
EST:     CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAG                         GAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA
genomic: CTGCTGACCACTTGAGGGAGGTATTCTACAGAATGGGCCTTAATGACAAGgtgtgcagat ... gagcttgcagGAAATTGTTGCCTTGTCTGGAGCACATACACTTGGAAGGTCCAGGCCTGAA