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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc...

Basic information

species Zea mays
transcript GRMZM2G119791_T07
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaaca---agcctgttttaggtataccat-tgttggcctcttgtttcccagatctc
 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| || || ||||| |||||||| |||||||||| |   |||  || || ||   || ||||  | || |  |||   |   |   |  ||   ||| ||  |     | ||    | |  | |    || |  
TGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGgtaatctcattgagttcttcat---atgtatctaagctaacacttcatatgtatctaagctaacttatgtgaatggcctattttagtgtgttcttgttgaccc-

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaa--acatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc--------------------
 |||||||| || || |||||||| || ||||||||||| ||| ||||||||||    ||||| || || ||||| |||||||| || ||||||||| ||||||  | ||||   |   | |      | |      || ||  ||| | | |    | || ||   | ||     | || |   || |  |  |  || |                     
TGTTGTTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGgtaataatatgtctaacactctgatttctttgagtttaccgacacttcg-acatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaac--atgttgcattgtttatcaaatatatcggaac----tgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc
 |||||||| || ||||||||||| || || ||||| |||||| |||||||||||   ||||| |  ||  | || || |||||||| ||||| |||||||||||   |  ||  | |||||||   |  | |  ||||    |  | || ||| ||  |   ||  |  || | |    | |  || |  |  |    | |    
GGTTGTTGGAAATTCAGGAGATCTTTTAAAGACAGAATTTGGAGAAGAGATTGATAGCCATGATGTGGTTATACGTGAGAATGAGGCTCCTGTTAATAAGgtaaattaacatttgagtgtttatttgacttttatgaacacagtagaactatgccaagtatattgact--ggaagagggatttctgctttgtaataagaata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936990|gb|EC881159.2|EC881159
EST:     TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG                         AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCNG
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
EST: gi|78092057|gb|DV520431.1|DV520431
EST:     TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCCTGTCA-TAAG                         AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
genomic: TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACC-TGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG