Sequence
atgc intronic sequence ATGC exonic sequenceAGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaaca---agcctgttttaggtataccat-tgttggcctcttgtttcccagatctc
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TGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGgtaatctcattgagttcttcat---atgtatctaagctaacacttcatatgtatctaagctaacttatgtgaatggcctattttagtgtgttcttgttgaccc-
upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaa--acatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc--------------------
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TGTTGTTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGgtaataatatgtctaacactctgatttctttgagtttaccgacacttcg-acatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcag
upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaac--atgttgcattgtttatcaaatatatcggaac----tgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc
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GGTTGTTGGAAATTCAGGAGATCTTTTAAAGACAGAATTTGGAGAAGAGATTGATAGCCATGATGTGGTTATACGTGAGAATGAGGCTCCTGTTAATAAGgtaaattaacatttgagtgtttatttgacttttatgaacacagtagaactatgccaagtatattgact--ggaagagggatttctgctttgtaataagaata----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149084948|gb|EE174458.2|EE174458EST: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaacaa