Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc...

Basic information

species Zea mays
transcript GRMZM2G119791_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgttgcattgtttatcaaatatatcggaactgaagctttgcaaaca---agcctgttttaggtataccat-tgttggcctcttgtttcccagatctc
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| || || ||||| |||||||| |||||||||| | ||| || || || || |||| | || | ||| | | | || ||| || | | || | | | | || |
TGTTGTTGGTAACTCAGGGGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCACATGATGCTGTGTTCCGAGATAATGAAGCACCTGTTAATAAGgtaatctcattgagttcttcat---atgtatctaagctaacacttcatatgtatctaagctaacttatgtgaatggcctattttagtgtgttcttgttgaccc-

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaa--acatgttgcattgtttatcaaatatatcggaactgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc--------------------
|||||||| || || |||||||| || ||||||||||| ||| |||||||||| ||||| || || ||||| |||||||| || ||||||||| |||||| | |||| | | | | | || || ||| | | | | || || | || | || | || | | | || |
TGTTGTTGGAAATTCTGGAGATCTGTTAAAAACAGAGTTCGGAGAAGAGATTGACAGTCATGATGCTGTATTTCGAGACAATGAAGCTCCTGTCAATGAGgtaataatatgtctaacactctgatttctttgagtttaccgacacttcg-acatggtcttgattcttgaattttgatttttgttgctggcattgcttatattcatgttgaactatgttgcag

upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 6
AGTTGTTGGTAACTCAGGAGATCTCTTGAAAACAGAGTTTGGACAAGAGATTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaac--atgttgcattgtttatcaaatatatcggaac----tgaagctttgcaaacaagcctgttttaggtataccattgttggcctcttgtttcccagatctc
|||||||| || ||||||||||| || || ||||| |||||| ||||||||||| ||||| | || | || || |||||||| ||||| ||||||||||| | || | ||||||| | | | |||| | | || ||| || | || | || | | | | || | | | | |
GGTTGTTGGAAATTCAGGAGATCTTTTAAAGACAGAATTTGGAGAAGAGATTGATAGCCATGATGTGGTTATACGTGAGAATGAGGCTCCTGTTAATAAGgtaaattaacatttgagtgtttatttgacttttatgaacacagtagaactatgccaagtatattgact--ggaagagggatttctgctttgtaataagaata----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148936990|gb|EC881159.2|EC881159
EST:     TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG                         AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCNG
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
EST: gi|78092057|gb|DV520431.1|DV520431
EST:     TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCCTGTCA-TAAG                         AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
genomic: TGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACC-TGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
EST: gi|71428024|gb|DR809074.1|DR809074
EST:     TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAG                         AAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG
genomic: TTGATGCGCATGACGCCGTGTTTCGGGACAATGAGGCACCTGTCAATAAGgtaaacatgt ... tcatctgcagAAATATGCAAAACATGTTGGATTGAAAAGAGACTTTCGACTGGTTGTCCGG