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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgacagactggcaccttacctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatccacatcgtgattaaacttgtagtcactttatttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatag

Basic information

species Zea mays
transcript GRMZM2G119725_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119725_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g19510.3 (Oryza sativa), 5'ss of exon 5
GACCTTACTAGCGAGCCGAGGTATCTTGTTACTTTTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgacagactggcaccttac-ctacttaagctcagtgtatcaaacttctgaactctgggactgatgtacagtagatcc-acatcgtgattaaacttgtagtcactttat-ttgaaatgagcatgtagtcctttcttccaatttcacgtaagtttcttttatag
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GACCTGAGTAGCGAACCACGGTACCTTGTTACTTTTACAGTTGGAATTACACAGAAGGCTAATATTGATGCTGCTGTCAAAAAGgtaactga--gacggacatcttgcattgcttaaatttggtgcatcaatcaactataccctgtaacagataaacagttaatcttgcattccggt-gaactggtagtcactttttcttaatgtaaatatgcaattattgcttctgaattcatagaagcttttcatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148930418|gb|EE284901.2|EE284901
EST:     TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG                         TTTTCAGAAAAAATCACCATTATGTTGTTCCATTATGATGGT
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGT
EST: gi|211445045|gb|FL132441.1|FL132441
EST:     TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG                         TTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACA
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTGTTCCATTATGATGGTCGGACTACA
EST: gi|148961302|gb|EE012027.2|EE012027
EST:     TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAG                         TTTTCAGACAAATTCACCATTATGTTG
genomic: TTACTGTTGGTATTGGGCAAAAGGCAAATATTGATGCAGCGGTCAGAAAGgtaactgaca ... tcttttatagTTTTCAGACAAATTCACCATTATGTTG