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TGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGTATATATGGTGACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgatgataccttttccttggttactttgttgctgatagctctcactcttctaccactaattttattagcttgatgtatattttgtttataatat...
species | Zea mays |
transcript | GRMZM2G119482_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGEST: gi|76289708|gb|DV029276.1|DV029276
genomic: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgat ... tgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
EST: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGEST: gi|149000791|gb|EE038015.2|EE038015
genomic: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgat ... tgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
EST: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATGEST: gi|78093012|gb|DV521386.1|DV521386
genomic: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgat ... tgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
EST: CATCATTCCCCCAACTTTATCCTGATCGCAGATTGTTGGTTTTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCCTGGAATTTTTTCCATTTTAGCEST: gi|71330637|gb|DR802090.1|DR802090
genomic: CATCATTCCCCCAACTTTATC-TGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgat ... tgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTT--CCATT--AGC
EST: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAG CCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
genomic: ACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgat ... tgcactgcagCCTGTTGGGGTAGTTGGAGCTATTACACCATGGAATTTTCCATTAGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAGTTTCATAGAATATTTTGCAGAGGAAGCAAAGCGTATATATGGTGACATCATTCCCCCAACTTTATCTGATCGCAGATTGTTGGTTTTGAAGCAGgcaatatgatgataccttttccttggttactttgttgctgatagctctcactcttctaccactaattttattagcttgatgtatattttgtttataatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC