1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACAAGGTAGTCCAGGAGAAGAAGGTGTTAGAGGTTCATGTGGAGAAAGGAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctctgttacagtttacacatgcatgcacatatctgcatcctatcagtatctatctaatgtttggattttcgctcttttcag
species | Zea mays |
transcript | GRMZM2G118731_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAATGCAACATAACCAAAAAATTGTATTCCAGGGTCAAGCTGATGAAGCT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|18964087|gb|BM660802.1|BM660802
genomic: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|76293181|gb|DV032749.1|DV032749
genomic: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: CAGGGTCAAGCTGATGAAGCT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|6095397|gb|AW120064.1|AW120064
genomic: CAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|18963673|gb|BM660567.1|BM660567
genomic: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCT CCTGAT-CGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|32930958|gb|CF035770.1|CF035770
genomic: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: AATGCAACATAACCAAAAGATTGTGGAC--GGAGTCAAGCTGATGAAACT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCATEST: gi|67025522|gb|CO454271.1|CO454271
genomic: AATGCAACATAACCAAAAGATTGTATTCCAGG-GTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
EST: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCT CCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
genomic: GAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctct ... ctcttttcagCCTGATACGGTTACAGGAGACATTGTTTTTGTCTTGCAACTTAAAGACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAGGTAGTCCAGGAGAAGAAGGTGTTAGAGGTTCATGTGGAGAAAGGAATGCAACATAACCAAAAGATTGTATTCCAGGGTCAAGCTGATGAAGCTgtgagtctctgttacagtttacacatgcatgcacatatctgcatcctatcagtatctatctaatgtttggattttcgctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC