Sequence
atgc intronic sequence ATGC exonic sequenceGTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaacaatgaaagattatattattatgtccttcatcagttctatttatgaattttaacaatgtcccttttttccatttcttttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 6
GTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaac-aatgaaagattatattattatgtccttcatcagttctatttatgaattttaacaatgtcccttttttccatttcttttgaag
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GTTGAGTTCAATAAGGCTGCACAATCATTGACAGACGCAATTATTCCCTCTACCCAAAGAAGAGTTGCTTTGAGTCGATTGATTAAGgtatgataaattaatagaagaggatattgc-atgc---taatttattccattgctgacttttcattattgc---tggttctgttttctttgaag
upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G39210.1 (Glycine max), 5'ss of exon 5
GTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaacaatgaaagattatattattatgtccttcatcagttctatttatgaattttaacaatgtcccttttttccatttcttttgaag
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GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCGACCACTCAGAAGAAAACTGCCTTGAATAGACTGGTTAAGgtgcttattgcacc-aaagattgcat-gttactttaaaaaatgatgctcttattgaagt--agtacttaccaagttttctttacattcttag-
upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 5
GTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaacaatgaaagatt--atattattatgtccttcatcagttctatttatg-aattttaacaatgtcccttttttccatttcttttgaag
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GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACTGCCTTGAATAGATTGGTTAAGgtagcttattgcaccaataattgcatgttactataataaatgactctcttattgaagtagttcttaccaagtt--ttctttacattcttag-----
upper sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaacaatgaaagattatattattatgtccttcat-cagttctatttatgaattttaac--aatgtcccttttttccatttcttttgaag
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GTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTTTCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAGgtactctgagatgctctatagtatgat-ttctgttttccgcacattcttggtgatattttttcatgtaaaactgatttagagtctttctttttag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211192150|gb|FK946799.1|FK946799EST: AAAGAGTGGCTTTAAGTCGATTGATTAAA GACWACATTGCACTAATTGCGGTTTTAGAAGCCAAATTTGGTAATCATGGA
genomic: AAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaa ... tcttttgaagGACAACATTGCACTAATTGCGGTTTTAGAAGCCAAATTTGGTAATCATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGAGTTCAATAAGGCTGCACAGTCTTTAACAGATGCTATTATTCCTGCTGCCCAGAAAAGAGTGGCTTTAAGTCGATTGATTAAAgtgagaaaaacaatgaaagattatattattatgtccttcatcagttctatttatgaattttaacaatgtcccttttttccatttcttttgaag
- - - - - - - - - - - - - - - - - - - - - - - TGCTGC