1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTCAACCTCCTCAAGTGGCGGCAGCGCCACCACCAGCTCCACCCGATGCTCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaagcaatgtgttgaatttctttgcaaagtagcatggattagtggtttgtttcgtatacaggcgtatctttatttcttaactggggctaagttt...
species | Zea mays |
transcript | GRMZM2G118014_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAGEST: gi|211400936|gb|FL417155.1|FL417155
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAGEST: gi|149079348|gb|EE168324.2|EE168324
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGGAGAGGCAGAAGEST: gi|211517989|gb|FL372294.1|FL372294
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAGEST: gi|211311591|gb|FL416726.1|FL416726
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAGEST: gi|76020071|gb|DT947241.1|DT947241
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
EST: TCGTACTCCAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAAAAAGCTTTEST: gi|211019421|gb|FL374991.1|FL374991
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTT
EST: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTG GGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
genomic: TCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaag ... attttggtagGGGAACAAGGCATGGTTGATGAAGCTCAGAAAGCTTTGGAAGAGGCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCAACCTCCTCAAGTGGCGGCAGCGCCACCACCAGCTCCACCCGATGCTCGTACTCAAGAAATGATCAATGAAAAGCTTAAGAAAGCTGAAGAGCTTGgtatggaaagcaatgtgttgaatttctttgcaaagtagcatggattagtggtttgtttcgtatacaggcgtatctttatttcttaactggggctaagttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagcaa