1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCACCACCACGCGCAGAACGGCGGCGGCGCCGGGTACATGGGCTGCCGCCTGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgcccccggctgttaccatgggtgttgtgttgtgctccaccgtcgtccgattcgactgccataaatccgcacggccgggccgggcgcagcggcat...
species | Zea mays |
transcript | GRMZM2G116658_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTCEST: gi|148946498|gb|EC891809.2|EC891809
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTCEST: gi|149098428|gb|EE184407.2|EE184407
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTCEST: gi|149008252|gb|EE040406.2|EE040406
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTCEST: gi|148956093|gb|EC901850.2|EC901850
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTCEST: gi|14645977|gb|BI180166.1|BI180166
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
EST: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAG GTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
genomic: TGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgccc ... ctgaccacagGTCACGTGGGTTGTCCACGCGGAGTACGACGAGGCGGTGGTGCACCAACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCACCACGCGCAGAACGGCGGCGGCGCCGGGTACATGGGCTGCCGCCTGCTCCCCACCGGCTGCATCGTGCAAGACATGAACAACGGCTACTCCAAGgtacgtgcccccggctgttaccatgggtgttgtgttgtgctccaccgtcgtccgattcgactgccataaatccgcacggccgggccgggcgcagcggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccggc