1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACTCTCCAAAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgcttttgttccaactattagtatttttttatttcagagtttcagaacaaaatgatatctcgattcatgtgaaaaaactgtctatttattgtcactttttgtaaaattcag
species | Zea mays |
transcript | GRMZM2G116087_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTTTCACATATGAAACGGTGGAGCGTGCTEST: gi|60356414|gb|DN223387.1|DN223387
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|78125597|gb|DV543981.1|DV543981
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|149088482|gb|EE177591.2|EE177591
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|78089260|gb|DV517634.1|DV517634
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCNA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|211039898|gb|FK958023.1|FK958023
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|71762890|gb|DR960827.1|DR960827
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|94479717|gb|EB708675.1|EB708675
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTAC-CGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATAEST: gi|31352097|gb|CD436454.1|CD436454
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATA
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|211304785|gb|FL143334.1|FL143334
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAEST: gi|78111571|gb|DV529968.1|DV529968
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCA
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATEST: gi|148952137|gb|EC897931.2|EC897931
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCAT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGEST: gi|71448582|gb|DR829632.1|DR829632
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACG
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGTCAGCCATAATAGCCCCA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCTEST: gi|149086680|gb|EE176220.2|EE176220
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAACGGTGGAGCGTGCT
EST: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAA GACCGTGATCAACTCATGCGCCTTCTCACATATGAAAACGGTGGAGCGTGC
genomic: CCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgctt ... taaaattcagGACCGTGATCAACTCATGCGCCTTCTCACATATGAAA-CGGTGGAGCGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTCTCCAAAAGGATCCACTATGGGAAGTTTGTGGCAGAGGCCAAGTTTCAAGAGTCCCCTGAAGCTTACACGCCAGCCATAATAGCCCAAgtctgtgcttttgttccaactattagtatttttttatttcagagtttcagaacaaaatgatatctcgattcatgtgaaaaaactgtctatttattgtcactttttgtaaaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC