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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag

Basic information

species Zea mays
transcript GRMZM2G115198_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g09750.1 (Oryza sativa), 5'ss of exon 6
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgaga-cagatatttctggttgtgagagtataattgctttcttggt--------taacataaacc------cattttctattacaat----attttatggcaaccatttttagtaaacacttttctgcttggctcag
|||||||||  || |||||||||||||| |||||||||||||| ||| | |||||  |||| |||||||| |||||||||||| | ||| ||||  |||||||  |||| |     |   |||  |    |||| ||| |  | ||   ||||||   ||  ||  |   ||| |        || || ||| |      ||||    |||    |    ||||  ||  || |||  |||||| |   | ||||| || |  |||
AGCTTATTGGGGAATCTGCTGGGCTTAAGGGAGATGGCTCTGAGATTATCCTTGACTTGTTCTGTGGAACCGGAACCATTGGTCTTACCCTTGCTAGAAGgtaaattttctcactattatcatgctgttggagagcagttgctacta--tgtgaggccattttttttcatttgtttcaagtcttagcacaaaactttgagcattcgtcattcggttacccatttattgaaaagcatgattagtagatgttcttctgatttgaccag

upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA15G02550.1 (Glycine max), 5'ss of exon 6
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag
||||||| ||||||| ||||||  | |  || |||||||| |||||||| ||||| |||||||||||||| || || || ||||||||  ||||  ||||||| | |||  ||     |     ||  ||     ||      |||  ||  | | |   |||  |||||||  |         ||| |||  |  |                                                  
AGCTTATAGAAGATTGTGCTGGAGTCAGGGGTGATGGCTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACAATAGGTTTGACGCTTGCAAGAAGgtaatctttgatctc-catctggttttagtattttaggataaactg--tgaaacaatgagattaatttcttgtct--------tccaattttgaacag-------------------------------------------------

upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 5'ss of exon 7
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag
|||||||||| || |||||||| ||||||||||||||||| ||| | || || ||||| || ||||||||||| ||||| ||  | ||  ||||| |||||||       |    | ||| |  | | || | | |        |     | | | |  | |||||   ||| | |   | |  |   |  || |                                                    
AGCTTATTGAGGAATCTGCTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCATAGGCCTTACACTTGCCAGAAGgtaaacaacat--gagcgta-aagtactgtcaaaga-------ttaaaaataaaattgcagttgctga-ttgttcagtctgattcttctccctctag--------------------------------------------------

upper sequence: GRMZM2G115198_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 7
AGCTTATTGAAGATTCTGCTGGGCTTAAAGGAGATGGCTCTGAAATTGTTCTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagttttttttcaggtgtacatattccgtgagacagatatttctggttgtgagagtataattgctttcttggttaacataaacccattttctattacaatattttatggcaaccatttttagtaaacacttttctgcttggctcag
| ||||| ||||||| |||||| |||| ||| || |||||||||||||||||||| ||||||||||||||||||||||||||| | ||  || || ||||||   | ||||  |  ||| ||  ||   | |     ||   ||||  | |||  |  |  ||||||||    ||| ||                                                                    
AACTTATAGAAGATTGTGCTGGTCTTAGAGGTGACGGCTCTGAAATTGTTCTTGACCTGTTTTGTGGAACTGGAACCATTGGTCTAACACTTTCCAGAAGgtgaatgttttgtaattgttcagtttagttaatttttatcaatctgactttgaatgcctc-ttgctttcact-ttatcag-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6012611|gb|AW062048.1|AW062048
EST:     GGTTTGACCCTTGCCCGAAG                         GGCAAAGCCCATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: GGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|32916675|gb|CF021487.1|CF021487
EST:     CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCCTTGCCCGAAG                         GGCGAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|78090076|gb|DV518450.1|DV518450
EST:     CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAG                         GGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|148945132|gb|EC890330.2|EC890330
EST:     CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAG                         GGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|83278825|gb|DV942833.1|DV942833
EST:     TGGAACTGGAACCATTGGTTTGACCCTTGCCTGAAG                         GGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: TGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|78109730|gb|DV528146.1|DV528146
EST:     CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAG                         GGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
EST: gi|148938312|gb|EC882620.2|EC882620
EST:     CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAG                         GGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC
genomic: CTTGATCTGTTTTGTGGAACTGGAACCATTGGTTTGACCTTTGCCCGAAGgtagtttttt ... cttggctcagGGCAAAGCACATTTATGGATATGAAGTTGTCCCTGAAGCCATTGAAGATGC