1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATGCTATTTGAGCTGCACAATGATGCAACCCAGCGGATTTCACACTGTGGTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataaaaggataactcagttcacttgtatcttctgttatatggcgaaagaaatatgtctatacttatttattttatgtattctcacttgtttag
species | Zea mays |
transcript | GRMZM2G114220_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|211389876|gb|FL156781.1|FL156781
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCC-TATTGG ATGATGCAAAACATGCTEST: gi|211389878|gb|FL156783.1|FL156783
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCC-TATTGG ATGATGCAAAACATGCTEST: gi|211392499|gb|FL156788.1|FL156788
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|50338446|gb|CO533572.1|CO533572
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAEST: gi|32850146|gb|CD989827.1|CD989827
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTA
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|76909136|gb|DV163240.1|DV163240
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|6637070|gb|AW261342.1|AW261342
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTCAAAAATEST: gi|71417924|gb|DR804257.1|DR804257
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|91049005|gb|EB159423.1|EB159423
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|32859779|gb|CD999460.1|CD999460
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|32862738|gb|CF002420.1|CF002420
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|211395124|gb|FL156801.1|FL156801
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTNCA-GAGGGTGACACTGGTC-ATGTAAAAAEST: gi|91873355|gb|EB403312.1|EB403312
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTT-CAAGAGGGTGACACTG-TCCATGTAAAAA
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|14242735|gb|BG840580.2|BG840580
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|213183590|gb|FM196389.1|FM196389
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAATEST: gi|93015584|gb|EB641104.1|EB641104
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
EST: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGG ATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
genomic: GTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataa ... acttgtttagATGATGCAAAACATGCTGCTTCAAGAGGGTGACACTGTCCATGTAAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGCTATTTGAGCTGCACAATGATGCAACCCAGCGGATTTCACACTGTGGTGTTTTGGAGTTTGTTGCAGAAGAAGGCATGATCATCATGCCCTATTGGgtatgtataaaaggataactcagttcacttgtatcttctgttatatggcgaaagaaatatgtctatacttatttattttatgtattctcacttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG