Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCAGATGCAGATACTGAAAAGCGTCACATGGATTCAGAGTCACAGGCTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagtttttttcctcttggatgctcttgtctaaattttgttatgttgaatttgtgactatacaataagggatcttgagtctgaaacaatgatacaagtg...

Basic information

species Zea mays
transcript GRMZM2G114131_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60401013|gb|DN233820.1|DN233820
EST:     CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT                         GTTTTGGAGTATGTCGCATCACTCCTTGAAATGCCAGAGTCAGAATTGGCG
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
EST: gi|60336790|gb|DN203763.1|DN203763
EST:     CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT                         GTTTTGGAGTATGTTGCATCACTCCTTGAAATGCCAGAGTCAGAATTGGCG
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
EST: gi|50331795|gb|CO526921.1|CO526921
EST:     CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATT                         GTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG
genomic: CTGCTAATGCATCAAATGAGTCCTTGAACCATCCAGAAAATATCCATATTgtaagttttt ... ttgtttccagGTTTTGGAGTATGTCGCATCACTCCTTGAAATGACAGAGTCAGAATTGGCG