1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACTTTGGCGGTGAAGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttttcatcctcaatgtcttttttcctatttttctcttctagaagactttgcaataagggtttgatgcttattcgtttgcctggggaatgaag
species | Zea mays |
transcript | GRMZM2G113726_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAG TTTCTGGATCGTCAAGGAGTAAGCTACTGTTGEST: gi|51593066|gb|CV072212.1|CV072212
genomic: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttt ... gggaatgaagTTTCTGGATCGTCAAGGAGTAAGCTACTGTTG
EST: AGCATAACTTGCTTGTTACTGGTGGATTTCATGGGGAGATAATATGCAAG TTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGACEST: gi|211510692|gb|FL132928.1|FL132928
genomic: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttt ... gggaatgaagTTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGAC
EST: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAG TTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGACEST: gi|71771227|gb|DR969164.1|DR969164
genomic: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttt ... gggaatgaagTTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGAC
EST: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAG TTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGACEST: gi|109179023|gb|EC379766.1|EC379766
genomic: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttt ... gggaatgaagTTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGAC
EST: AGCATAACTTGCTTGTTACTGGTGGATTTCATGGGGAGATAATATGCAAG TTTCTGGATCGTCTAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGAC
genomic: AGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttt ... gggaatgaagTTTCTGGATCGTCAAGGAGTAAGCTACTGTTGCAAGACAACAAATGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCACTACGAGGGTTTTTATCAGACTCCAGTCAGTACTTTGGCGGTGAAGCATAACTTGCTTGTTACTGGTGGGTTTCATGGGGAGATAATATGCAAGgtgatatttttcatcctcaatgtcttttttcctatttttctcttctagaagactttgcaataagggtttgatgcttattcgtttgcctggggaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT