1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctttcacagaacaagtccgaatatataactcgcgagatatcctggcaatgccaaatcttcgtttatttttctttcctcgtgcatttcactttttttttttttactttgattgttcacatttgtattcattttcggaactgtcag
species | Zea mays |
transcript | GRMZM2G113640_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAEST: gi|91874160|gb|EB404117.1|EB404117
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCA
EST: CACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|32928356|gb|CF033168.1|CF033168
genomic: CACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|213171204|gb|FM188301.1|FM188301
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|211470300|gb|FL449608.1|FL449608
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: CTCTACACCAAG-CTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTTEST: gi|6227108|gb|AW155812.1|AW155812
genomic: CTCTACA-CAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
EST: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAA CATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
genomic: GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctt ... gaactgtcagCATATCAAGAAGGCAGCCTTGCGTGGCTTCAATGCCATCAGTGCGGAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTCTCAAGCTGTCTATTCTCTACACAAGACTTCCACTAGAGAAgtaagttctttcacagaacaagtccgaatatataactcgcgagatatcctggcaatgccaaatcttcgtttatttttctttcctcgtgcatttcactttttttttttttactttgattgttcacatttgtattcattttcggaactgtcag
- - - - CAAGCT
- - - - - AAGCTG